New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	= 274373	NA (NA)	32 (0.130)	26/180	NT	9.4%	intergenic (‑32/‑176)	insH/mmuP	IS5 transposase and trans‑activator/S‑methylmethionine transporter
	?	NC_007779	678446 =	309 (1.290)					coding (610/1428 nt)	djlB	chaperone

AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/274287‑274373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGGTCGCCTGGATATCCCCGAACT  >  NC_007779/678446‑678543                                                                                                                                                                                           AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCAACATCG                                                                                      <  1:9847138/101‑1     AAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCA                                                                                  >  1:10980004/1‑101         TGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGA                                                                              <  1:10934279/101‑1            TGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTA                                                                           >  1:6781975/1‑101              ACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATC                                                                         <  1:1386410/101‑1                 CATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCC                                                                      <  1:9414922/101‑1                 CATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCC                                                                      <  1:8728656/101‑1                           CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAA                                                            <  1:11474715/101‑1                            CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAA                                                           >  1:10198259/1‑101                                  TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCA                                                     <  1:1802623/101‑1                                   ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCAC                                                    >  1:8015127/1‑101                                   ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCAC                                                    >  1:6745405/1‑101                                     GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAG                                                  <  1:3843903/101‑1                                        TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAA                                               <  1:1307215/101‑1                                        TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAA                                               <  1:2770257/101‑1                                           AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTT                                            >  1:9049136/1‑101                                             ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTAC                                          <  1:6725159/101‑1                                                ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCC                                       <  1:4497962/101‑1                                                 CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCG                                      >  1:7213426/1‑101                                                  AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGC                                     >  1:5779835/1‑101                                                  AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGC                                     >  1:6057467/1‑101                                                       TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTA                                >  1:4274914/1‑101                                                       TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTA                                <  1:6117069/101‑1                                                       TGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTA                                <  1:2115827/101‑1                                                         ATCTCATATCAGGGACCTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATA                              >  1:5142616/1‑101                                                          TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAG                             >  1:11807222/1‑101                                                          TCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAG                             >  1:8777297/1‑101                                                                    GGGACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATTCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGGTCGC                   <  1:6300359/101‑1                                                                       ACTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGGTCGCCTG                >  1:7555421/1‑101                                                                        CTTGTTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGGTCGCCTGG               >  1:10324227/1‑101                                                                            TTCGCACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGGTCGCCTGGATAT           <  1:4263540/101‑1                                                                                 ACCTTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGGTCGCCTGGATATCCCCG      >  1:11150988/1‑101                                                                                    TTCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGGTCGCCTGGATATCCCCGAAC   >  1:11094293/1‑101                                                                                     TCCTTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGGTCGCCTGGATATCCCCGAACT  <  1:9208044/101‑1                                                                                                                                                                                           AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_007779/274287‑274373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCGCAACATCGCGCAGTGATTATCCCCGATGATGCAAAACTGCACAGAAATTTACTCCGCTGGTATAGCGCAGGTCGCCTGGATATCCCCGAACT  >  NC_007779/678446‑678543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.