New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007779	49661 =	277 (1.010)	37 (0.140)	34/180	NT	11.8%	intergenic (+30/‑162)	kefC/folA	potassium:proton antiporter/dihydrofolate reductase
	?	NC_007779	273179 =	NA (NA)					coding (1109/1146 nt)	ykfC	hypothetical protein

TGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/49759‑49661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  >  NC_007779/273179‑273273                                                                                                                                                                                                    TGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTTTCTCCCTGGGCTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGG                                                                                               <  1:6197658/101‑1    GAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAG                                                                                            >  1:13717091/1‑101     AGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGG                                                                                           >  1:10512808/1‑101       GATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTG                                                                                         >  1:12275442/1‑101       GATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTG                                                                                         <  1:670383/101‑1        ATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGC                                                                                        >  1:12246911/1‑101          GATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGA                                                                                      <  1:4950447/101‑1               TGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAG                                                                                 >  1:13292703/1‑101                GAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGC                                                                                >  1:6347009/1‑101                      AATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAA                                                                          >  1:9468237/1‑101                         TTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATT                                                                       <  1:76123/101‑1                            ATATTCTGCTGGCGAATCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTT                                                                    <  1:6689948/101‑1                             TATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTC                                                                   >  1:3115111/1‑101                                  TGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGC                                                              >  1:8671614/1‑101                                   GCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT                                                             >  1:9054866/1‑101                                         GAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCA                                                       <  1:4738073/101‑1                                          AGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAG                                                      >  1:6656241/1‑101                                               ACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT                                                 >  1:5271634/1‑101                                                   TCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT                                             <  1:12404241/101‑1                                                     TCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTT                                           <  1:1537878/101‑1                                                            GGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG                                    >  1:2757269/1‑101                                                             GACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGT                                   <  1:4785640/101‑1                                                              ACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTT                                  >  1:8252981/1‑101                                                                TCGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG                                <  1:391831/101‑1                                                                 CGCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCTTGTTTGA                               >  1:1574738/1‑101                                                                  GCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG                              <  1:1421597/101‑1                                                                  GCCGCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG                              <  1:7007365/101‑1                                                                     GCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCG                           <  1:6930801/101‑1                                                                     GCATTACAATGAAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCACGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCG                           >  1:982913/1‑101                                                                                AAACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCC                >  1:10436077/1‑101                                                                                 AACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCC               >  1:8166609/1‑101                                                                                  ACAAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCG              >  1:7876510/1‑101                                                                                    AAAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTA            <  1:4643416/101‑1                                                                                     AAAACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAA           >  1:5588561/1‑101                                                                                       AACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAT         <  1:7586526/101‑1                                                                                        ACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATG        >  1:8737346/1‑101                                                                                        ACAAACAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATG        <  1:11955258/101‑1                                                                                              AGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  <  1:6000425/101‑1                                                                                              AGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  <  1:9496586/101‑1                                                                                                                                                                                                    TGCGAGGATGATGTTGAGGAAAATTTTATATTCTGCTGGCGAGTCCACGCTCTCTCCCTGGACTCGCCGCATTACAATGAAACAAAAACAAACAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_007779/49759‑49661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA  >  NC_007779/273179‑273273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.