New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 3746911 =NA (NA)257 (1.100) 120/180 NT 99.6% intergenic (‑509/‑68) mdtL/insH multidrug efflux system protein/IS5 element protein
?NC_007779 = 3748646 1 (0.000)intergenic (+687/+425) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent

GTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAC  >  NC_007779/3746822‑3747005
                                                                                         |                                                                                              
ctGGGGGTTATCCAATTTAAACAGGGTCGCCAAATAAACGAACAACCCCAGCGTGACCCCAAAGAACGAACTGGCAACAGCTAAGTTAGAGaacaccagca                                                                                     <  1:4689541/100‑9 (MQ=255)
                                                                                   tgTTAGGGAAGGGGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGACCCATAGAACAGGGATCATCATGAGACATCAATTTACCTTCGCCGAc  >  1:8029267/2‑101 (MQ=11)
                                                                                         |                                                                                              
GTGGGAGTTATCAATCTTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAC  >  NC_007779/3746822‑3747005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.