mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 3,734,364 | 1 | .→A | 1.0% | 11.5 0.0 ‑0.1 | 391 | coding (1385/1413 nt) | bglB | cryptic phospho‑beta‑glucosidase B |
| * | NC_007779 | 3,293,230 | 1 | .→A | 1.0% | 11.4 ‑1.1 ‑0.1 | 402 | intergenic (‑40/‑25) | yraL/yraM | methyltransferase/hypothetical protein |
| * | NC_007779 | 4,510,865 | 1 | .→A | 0.8% | 6.9 ‑0.5 ‑0.4 | 394 | coding (899/1119 nt) | yjhC | oxidoreductase |
| * | NC_007779 | 1,348,546 | 1 | .→T | 0.7% | 6.5 ‑0.5 ‑0.0 | 414 | intergenic (‑90/+146) | gmr/rnb | modulator of Rnase II stability/ribonuclease II |
| * | NC_007779 | 986,260 | 1 | .→A | 0.7% | 2.5 ‑0.7 ‑0.0 | 384 | intergenic (‑129/+56) | aspC/ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| * | NC_007779 | 2,012,275 | 1 | .→A | 0.5% | 2.4 ‑0.7 ‑0.5 | 410 | coding (318/669 nt) | yedK | hypothetical protein |
| * | NC_007779 | 1,450,771 | 1 | .→T | 0.5% | 2.3 0.0 ‑0.1 | 392 | intergenic (+39/+19) | feaB/tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| * | NC_007779 | 1,511,719 | 1 | .→A | 0.5% | 2.3 0.0 ‑0.1 | 402 | coding (3/1407 nt) | ydcR | fused DNA‑binding transcriptional regulator and amino transferase |
| * | NC_007779 | 2,127,094 | 1 | .→A | 0.5% | 2.3 ‑0.7 ‑0.1 | 410 | coding (790/1224 nt) | wcaI | glycosyl transferase |
| * | NC_007779 | 2,974,757 | 1 | .→A | 0.5% | 2.3 ‑0.7 ‑0.9 | 404 | intergenic (‑87/‑498) | aas/galR | bifunctional 2‑acylglycerophospho‑ethanolamine acyl transferase and acyl‑acyl carrier protein synthetase/DNA‑binding transcriptional repressor |
| * | NC_007779 | 3,152,854 | 1 | .→A | 0.5% | 2.3 ‑1.5 ‑0.1 | 397 | coding (636/660 nt) | yghB | inner membrane protein |
| * | NC_007779 | 3,411,401 | 1 | .→A | 0.5% | 2.3 0.0 ‑0.1 | 419 | coding (276/297 nt) | fis | global DNA‑binding transcriptional dual regulator |
| * | NC_007779 | 4,601,746 | 1 | .→T | 0.5% | 2.2 0.0 ‑0.1 | 396 | intergenic (+54/+84) | yjjN/mdoB | oxidoreductase/phosphoglycerol transferase I |
| * | NC_007779 | 4,016,769 | 1 | .→C | 0.5% | 2.0 ‑1.7 ‑0.0 | 405 | coding (248/384 nt) | yhhH | hypothetical protein |
| * | NC_007779 | 3,786,728 | 1 | .→G | 0.5% | 1.9 ‑0.7 ‑0.0 | 384 | intergenic (‑235/‑699) | emrD/ivbL | multidrug efflux system protein/ilvB operon leader peptide |
| * | NC_007779 | 4,190,766 | 1 | .→A | 0.5% | 1.8 ‑0.7 ‑0.3 | 418 | coding (234/702 nt) | rpsC | 30S ribosomal protein S3 |
| * | NC_007779 | 1,097,764 | 1 | .→A | 0.3% | 1.7 ‑0.6 ‑0.4 | 728 | intergenic (+513/+42) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 3,645,448 | 1 | .→A | 0.5% | 1.4 ‑1.4 ‑0.0 | 396 | coding (81/2547 nt) | cyaA | adenylate cyclase |
| * | NC_007779 | 4,027,179 | 1 | .→T | 0.5% | 1.3 ‑0.7 ‑0.0 | 401 | coding (268/588 nt) | acpT | holo‑(acyl carrier protein) synthase 2 |
| * | NC_007779 | 2,757,983 | 1 | .→A | 0.5% | 0.5 0.0 0.0 | 408 | coding (343/1410 nt) | yfjI | hypothetical protein |
| * | NC_007779 | 1,472,022 | 0 | T→A | 100.0% | ‑0.5 | 1 | P317P (CCT→CCA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,023 | 0 | C→A | 100.0% | ‑0.5 | 1 | Q318K (CAG→AAG) | insI | IS30 transposase |
| * | NC_007779 | 1,472,025 | 0 | G→A | 100.0% | ‑0.5 | 1 | Q318Q (CAG→CAA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,027 | 0 | G→A | 100.0% | ‑0.5 | 1 | S319N (AGT→AAT) | insI | IS30 transposase |
| * | NC_007779 | 1,472,028 | 0 | T→A | 100.0% | ‑0.5 | 1 | S319R (AGT→AGA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,029 | 0 | C→A | 100.0% | ‑0.5 | 1 | P320T (CCT→ACT) | insI | IS30 transposase |
| * | NC_007779 | 1,472,030 | 0 | C→A | 100.0% | ‑0.5 | 1 | P320H (CCT→CAT) | insI | IS30 transposase |
| * | NC_007779 | 1,472,031 | 0 | T→A | 100.0% | ‑0.5 | 1 | P320P (CCT→CCA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,032 | 0 | T→A | 100.0% | ‑0.5 | 1 | W321R (TGG→AGG) | insI | IS30 transposase |
| * | NC_007779 | 1,472,033 | 0 | G→A | 100.0% | ‑0.5 | 1 | W321* (TGG→TAG) | insI | IS30 transposase |
| * | NC_007779 | 1,472,034 | 0 | G→A | 100.0% | ‑0.5 | 1 | W321* (TGG→TGA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,035 | 0 | C→A | 100.0% | ‑0.5 | 1 | Q322K (CAG→AAG) | insI | IS30 transposase |
| * | NC_007779 | 1,472,037 | 0 | G→A | 100.0% | ‑0.5 | 1 | Q322Q (CAG→CAA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,038 | 0 | C→A | 100.0% | ‑0.5 | 1 | R323R (CGG→AGG) | insI | IS30 transposase |
| * | NC_007779 | 1,472,039 | 0 | G→A | 100.0% | ‑0.5 | 1 | R323Q (CGG→CAG) | insI | IS30 transposase |
| * | NC_007779 | 1,472,040 | 0 | G→A | 100.0% | ‑0.5 | 1 | R323R (CGG→CGA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,041 | 0 | G→A | 100.0% | ‑0.5 | 1 | G324R (GGA→AGA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,042 | 0 | G→A | 100.0% | ‑0.5 | 1 | G324E (GGA→GAA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,045 | 0 | C→A | 100.0% | ‑0.5 | 1 | T325K (ACA→AAA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,049 | 0 | T→A | 100.0% | ‑0.5 | 1 | N326K (AAT→AAA) | insI | IS30 transposase |
| * | NC_007779 | 1,472,050 | 0 | G→A | 100.0% | ‑0.5 | 1 | E327K (GAG→AAG) | insI | IS30 transposase |