| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 2412225 | NA (NA) | 33 (0.130) | 29/180 | NT | 12.0% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase |
| ? | NC_007779 | 2941338 = | 243 (0.940) | intergenic (‑115/+236) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_007779/2412143‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTT > NC_007779/2941338‑2941425 AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTAGGCAGCATCACCCCTATAGTGGCGGCACTT < 1:12890905/101‑1 CAGCTGATAGAAACAGAAGCCACTGGGGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGA < 1:1586729/101‑1 CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGA > 1:3662912/1‑101 GCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGC > 1:8936767/1‑101 ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGA > 1:8237260/1‑101 TAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAA > 1:13212185/1‑101 TAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAA > 1:5382795/1‑101 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACG > 1:1418894/1‑101 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGA > 1:12971032/1‑101 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAA < 1:1896061/101‑1 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTT > 1:12239010/1‑101 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATC < 1:5795989/101‑1 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATC > 1:2461485/1‑101 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAAT < 1:12380511/101‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATG < 1:9618631/101‑1 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGC > 1:4436695/1‑101 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCG > 1:6743382/1‑101 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTG < 1:9712366/101‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGG > 1:12019403/1‑101 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGA < 1:6055756/101‑1 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAAC > 1:2188653/1‑101 CATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTT < 1:5699659/101‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTT > 1:6049375/1‑101 TAAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTA > 1:12280015/1‑101 AAATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTAC < 1:7346449/101‑1 AATCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACG > 1:5120651/1‑101 TCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGT > 1:6189142/1‑101 TCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGT > 1:12603836/1‑101 TCAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGT > 1:10337321/1‑101 CAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTT > 1:12722512/1‑101 CAGTAAGTTGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTT < 1:6794054/101‑1 TGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTT < 1:2544820/101‑1 TGGCAGCATCACCCCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTT < 1:7184351/101‑1 AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_007779/2412143‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTT > NC_007779/2941338‑2941425 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |