Publications

  • Regulation of Global Transcription in Escherichia coli by Rsd and 6S RNA. [Link]
  • Modulation of Global Transcriptional Regulatory Networks as a Strategy for Increasing Kanamycin Resistance of the Translational Elongation Factor-G Mutants in Escherichia coli. [Link]
  • CRISPR-Cas-Mediated Gene Silencing Reveals RacR To Be a Negative Regulator of YdaS and YdaT Toxins in Escherichia coli K-12. [Link]
  • Repression of YdaS Toxin Is Mediated by Transcriptional Repressor RacR in the Cryptic racProphage of Escherichia coli K-12. [Link]
  • Genomewide Mutational Diversity in Escherichia coli Population Evolving in Prolonged Stationary Phase. [Link]
  • Nucleoid-Associated Proteins: Genome Level Occupancy and Expression Analysis. [Link]
  • Comparative Genomics of Interreplichore Translocations in Bacteria: A Measure of Chromosome Topology? [Link]
  • Genome scale patterns of supercoiling in a bacterial chromosome. [Link]
  • Restriction modification systems as engines of diversity. [Link]
  • The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli. [Link]
  • Genomic analysis reveals distinct concentration-dependent evolutionary trajectories for antibiotic resistance in Escherichia coli. [Link]
  • The Impact of Next-Generation Sequencing Technology on Bacterial Genomics. [Link]
  • Inhibition of factor-dependent transcription termination in Escherichia coli might relieve xenogene silencing by abrogating H-NS-DNA interactions in vivo. [Link]
  • Gene expression homeostasis and chromosome architecture. [Link]
  • Identification of neoblast- and regeneration-specific miRNAs in the planarian Schmidtea mediterranea.[Link]
  • Genome and Transcriptome Adaptation Accompanying Emergence of the Definitive Type 2 Host-Restricted Salmonella enterica Serovar Typhimurium Pathovar. [Link]
  • Genomic analysis reveals epistatic silencing of "expensive" genes in Escherichia coli K-12. [Link]
  • Genome sequencing unveils a novel sea enterotoxin-carrying PVL phage in Staphylococcus aureus ST772 from India. [Link]
  • Draft genome sequence of Staphylococcus aureus ST672, an emerging disease clone from India. [Link]
  • Context-dependent conservation of DNA methyltransferases in bacteria. [Link]
  • Draft genome sequence of Staphylococcus aureus 118 (ST772), a major disease clone from India. [Link]
  • Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription. [Link]
  • Evidence of non-random mutation rates suggests an evolutionary risk management strategy. [Link]
  • Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12. [Link]
  • Comparative genomics suggests differential deployment of linear and branched signaling across bacteria. [Link]
  • Unanticipated intra- and inter-kingdom crosstalk involving small-molecules. Environmental Microbiology Reports (Crystal Ball Feature; 2011). [Link]
  • Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli. [Link]
  • Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity. [Link]
  • An overview of prokaryotic transcription factors : a summary of function and occurrence in bacterial genomes. [Link]
  • Principles of transcriptional regulation and evolution of the metabolic system in E. coli. [Link]
  • Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility. [Link]
  • Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972. [Link]
  • Codon choice in genes depends on flanking sequence information—implications for theoretical reverse translation. [Link]
  • Activation of Candida rugosa lipase at alkane-aqueous interfaces: a molecular dynamics study. [Link]
  • An assessment of the role of DNA adenine methyltransferase on gene expression regulation in E coli. [Link]
  • Transcriptional regulatory networks in bacteria: from input signals to output responses. [Link]
  • Social behavior of the yeast protein-protein interaction network. [Link]
  • Role of hydrophobic interactions and salt-bridges in beta-hairpin folding. [Link]
  • Gene Expression Studies in Arabidopsis thaliana - a Network Perspective. [Link]
  • Contextual inference of protein function. [Link]
  • Evidence of a double-lid movement in Pseudomonas aeruginosa lipase: insights from molecular dynamics simulations. [Link]
  • Promoter addresses: revelations from oligonucleotide profiling applied to the Escherichia coli genome. [Link]
  • High-temperature unfolding of a trp-cage mini-protein: a molecular dynamics simulation study. [Link]