mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 66,457 | C→A | 100% | V32F (GTT→TTT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase |
| RA | 97,880 | C→T | 100% | S265F (TCC→TTC) | murD → | UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase |
| RA | 167,632 | C→A | 100% | P50Q (CCG→CAG) | fhuA → | ferrichrome outer membrane transporter |
| RA | 274,547 | A→G | 100% | intergenic (‑206/‑2) | insH ← / → mmuP | IS5 transposase and trans‑activator/S‑methylmethionine transporter |
| MC JC | 274,733 | Δ97,240 bp | 100% | [mmuP]–[mhpD] | 90 genes [mmuP], mmuM, afuC, afuB, insB, insA, ykgN, yagB, yagA, yagE, yagF, yagG, yagH, yagI, argF, insB, insA, yagJ, yagK, yagL, yagM, yagN, intF, yagP, yagQ, yagR, yagS, yagT, yagU, ykgJ, yagV, yagW, yagX, yagY, yagZ, ykgK, ykgL, Y75_p4288, Y75_p4289, eaeH, insE, insF, ykgA, ykgB, ykgI, ykgC, ykgD, ykgE, ykgF, ykgG, ykgH, betA, betB, betI, betT, yahA, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, [mhpD] |
|
| RA | 547,694 | A→G | 100% | intergenic (+123/‑1156) | fdrA → / → ylbF | acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein |
| RA | 547,831 | +G | 100% | intergenic (+260/‑1019) | fdrA → / → ylbF | acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 569,996 | G→C | 100% | intergenic (+345/‑120) | ybcK → / → ybcL | recombinase/kinase inhibitor |
| RA | 707,080 | C→T | 5.3% | P189L (CCG→CTG) | glnS → | glutaminyl‑tRNA synthetase |
| RA | 749,354 | C→A | 100% | P17P (CCG→CCT) | ybgO ← | fimbrial‑like adhesin protein |
| RA | 758,440 | C→A | 100% | F110L (TTC→TTA) | sdhB → | succinate dehydrogenase, FeS subunit |
| RA | 815,486 | G→C | 1.8% | P513P (CCG→CCC) | uvrB → | excinulease of nucleotide excision repair, DNA damage recognition component |
| RA | 815,489 | A→G | 1.5% | E514E (GAA→GAG) | uvrB → | excinulease of nucleotide excision repair, DNA damage recognition component |
| RA | 815,504 | G→A | 1.8% | A519A (GCG→GCA) | uvrB → | excinulease of nucleotide excision repair, DNA damage recognition component |
| RA | 887,234 | C→A | 100% | A176A (GCG→GCT) | ybjJ ← | transporter |
| RA | 987,574 | G→T | 100% | intergenic (‑170/+433) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | diguanylate cyclase |
| RA | 1,097,580 | C→T | 19.7% | intergenic (+329/+226) | ycdU → / ← serX | inner membrane protein/tRNA‑Ser |
| RA | 1,170,573 | C→T | 100% | intergenic (‑164/‑77) | ycfQ ← / → ycfR | DNA‑binding transcriptional regulator/hypothetical protein |
| RA | 1,197,797 | C→T | 5.2% | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,197,809 | C→T | 4.5% | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,197,822 | T→C | 3.0% | L375L (TTA→CTA) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,197,824 | A→G | 3.2% | L375L (TTA→TTG) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,213,001 | T→C | 4.9% | intergenic (+245/+256) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,013 | T→C | 4.8% | intergenic (+257/+244) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,026 | C→T | 3.5% | intergenic (+270/+231) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,028 | G→A | 3.5% | intergenic (+272/+229) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,058 | T→C | 1.7% | intergenic (+302/+199) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,061 | C→G | 1.3% | intergenic (+305/+196) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,318,876 | G→A | 100% | P21S (CCT→TCT) | trpA ← | tryptophan synthase subunit alpha |
| MC JC | 1,413,639 | Δ23,060 bp | 100% | [ydaO]–ynaE | 30 genes [ydaO], intR, ydaQ, ydaC, lar, recT, recE, racC, ydaE, kil, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, insH, stfR, tfaR, pinR, ynaE |
|
| RA | 1,483,588 | G→A | 100% | L322L (CTG→CTA) | ynbD → | phosphatase, inner membrane protein |
| RA | 1,496,775 | Δ1 bp | 100% | coding (11/924 nt) | ydcI ← | DNA‑binding transcriptional regulator |
| RA | 1,615,814 | C→A | 100% | D202Y (GAC→TAC) | yneI ← | aldehyde dehydrogenase |
| RA | 1,669,599 | Δ1 bp | 100% | coding (680/1221 nt) | dgsA ← | DNA‑binding transcriptional repressor |
| RA | 1,740,536 | G→T | 4.2% | E327* (GAA→TAA) | purR → | DNA‑binding transcriptional repressor |
| RA | 1,844,073 | G→A | 100% | intergenic (‑224/‑12) | ynjH ← / → gdhA | hypothetical protein/glutamate dehydrogenase, NADP‑specific |
| RA | 1,918,872 | T→A | 100% | S301T (TCC→ACC) | yebS → | inner membrane protein |
| RA | 1,973,476 | G→A | 100% | L310L (CTC→CTT) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 2,005,401 | C→T | 100% | E115K (GAA→AAA) | fliC ← | flagellar filament structural protein |
| RA | 2,170,094 | C→A | 100% | intergenic (‑437/+32) | ogrK ← / ← yegR | DNA‑binding transcriptional regulator/hypothetical protein |
| RA | 2,262,756 | A→C | 1.7% | intergenic (‑126/+297) | yeiC ← / ← fruA | kinase/fused fructose‑specific PTS enzyme IIB'BC components |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| RA | 2,406,075 | C→T | 100% | V51I (GTT→ATT) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,416,102 | G→A | 100% | L233L (CTG→TTG) | yfbS ← | transporter |
| RA | 2,538,628 | C→T | 100% | T258T (ACC→ACT) | cysK → | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,731,786 | C→G | 1.3% | A348A (GCG→GCC) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,794 | T→C | 1.4% | T346A (ACC→GCC) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,795 | A→G | 1.6% | D345D (GAT→GAC) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,798 | T→C | 1.4% | E344E (GAA→GAG) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,804 | A→G | 1.3% | S342S (TCT→TCC) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,805 | G→C | 1.4% | S342C (TCT→TGT) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,806 | A→T | 1.3% | S342T (TCT→ACT) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,807 | A→C | 1.3% | P341P (CCT→CCG) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,814 | G→C | 1.4% | A339G (GCC→GGC) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,816 | A→G | 1.8% | V338V (GTT→GTC) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,822 | C→G | 1.5% | V336V (GTG→GTC) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,825 | T→C | 1.4% | K335K (AAA→AAG) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,827 | T→G | 1.4% | K335Q (AAA→CAA) | clpB ← | protein disaggregation chaperone |
| RA | 2,731,840 | T→C | 1.5% | E330E (GAA→GAG) | clpB ← | protein disaggregation chaperone |
| RA | 2,865,228 | A→G | 4.1% | L288P (CTG→CCG) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| JC | 2,865,274 | +46 bp | 65.8% | coding (817/876 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| JC | 2,865,278 | +92 bp | 48.4% | coding (813/876 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,111 | A→G | 100% | intergenic (‑21/+159) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/outer membrane lipoprotein |
| JC | 2,941,415 | Δ8 bp | 10.8% | intergenic (‑192/+152) | gcvA ← / ← ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein |
| RA | 3,003,330 | G→A | 100% | L371L (CTC→CTT) | ygeV ← | DNA‑binding transcriptional regulator |
| RA | 3,049,815 | G→T | 100% | R387S (CGC→AGC) | visC ← | oxidoreductase |
| JC | 3,175,000 | Δ3 bp | 11.2% | coding (488‑490/828 nt) | cpdA ← | cyclic 3',5'‑adenosine monophosphate phosphodiesterase |
| RA | 3,397,813 | C→G | 100% | D141H (GAT→CAT) | yhdE ← | hypothetical protein |
| RA | 3,451,624 | C→A | 1.7% | G1271G (GGG→GGT) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,630 | A→G | 1.7% | R1269R (CGT→CGC) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,648 | T→A | 2.7% | A1263A (GCA→GCT) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,677 | C→T | 2.9% | V1254I (GTT→ATT) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,680 | G→T | 2.5% | L1253M (CTG→ATG) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,682 | C→G | 2.3% | S1252T (AGC→ACC) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,683 | T→A | 2.3% | S1252C (AGC→TGC) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,687 | A→C | 2.3% | S1250S (TCT→TCG) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,689 | A→G | 2.3% | S1250P (TCT→CCT) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,702 | C→A | 2.5% | A1245A (GCG→GCT) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,708 | C→A | 2.4% | M1243I (ATG→ATT) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,714 | G→C | 2.2% | D1241E (GAC→GAG) | rpoB ← | RNA polymerase subunit beta |
| RA | 3,451,731 | T→G | 2.2% | N1236H (AAC→CAC) | rpoB ← | RNA polymerase subunit beta |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| RA | 3,750,122 | Δ1 bp | 95.7% | coding (365/1416 nt) | tnaA ← | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,750,123 | C→T | 3.8% | G122S (GGC→AGC) | tnaA ← | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| MC JC | 3,750,591 | Δ1,199 bp | 100% | insH | insH | |
| RA | 3,898,657 | C→G | 100% | L259V (CTG→GTG) | yiaJ → | DNA‑binding transcriptional repressor |
| MC JC | 3,958,123 | Δ34 bp | 100% | coding (1156‑1189/1287 nt) | dctA → | C4‑dicarboxylic acid, orotate and citrate transporter |
| RA | 4,090,749 | A→T | 100% | Q135L (CAG→CTG) | malQ → | 4‑alpha‑glucanotransferase |
| RA | 4,153,710 | A→C | 4.3% | L196R (CTG→CGG) | crp ← | DNA‑binding transcriptional dual regulator |
| RA | 4,165,991 | A→C | 100% | K43T (AAA→ACA) | rpsL → | 30S ribosomal protein S12 |
| RA | 4,169,395 | C→T | 2.0% | I103I (ATC→ATT) | tufA → | protein chain elongation factor EF‑Tu |
| RA | 4,169,401 | A→T | 2.6% | V105V (GTA→GTT) | tufA → | protein chain elongation factor EF‑Tu |
| RA | 4,169,404 | T→C | 2.4% | V106V (GTT→GTC) | tufA → | protein chain elongation factor EF‑Tu |
| RA | 4,169,407 | T→C | 2.4% | A107A (GCT→GCC) | tufA → | protein chain elongation factor EF‑Tu |
| RA | 4,169,410 | G→T | 2.5% | A108A (GCG→GCT) | tufA → | protein chain elongation factor EF‑Tu |
| RA | 4,169,413 | T→C | 2.1% | T109T (ACT→ACC) | tufA → | protein chain elongation factor EF‑Tu |
| RA | 4,371,271 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,546,535 | T→A | 100% | intergenic (+296/‑182) | fimB → / → fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 1288301–1288388 | 1288524–1288459 | 72–224 | 239 [236] | [237] 239 | ychS | hypothetical protein |
| * | * | ÷ | NC_007779 | 2176983 | 2178208 | 1226 | 353 [0] | [0] 253 | insH | insH |
| * | * | ÷ | NC_007779 | 3128827–3130002 | 3147473 | 17472–18647 | 241 [236] | [0] 481 | [yghO]–[yghZ] | 19 genes [yghO], insH, yghQ, yghR, yghS, yghT, pitB, gss, yghU, hybG, hybF, hybE, hybD, hybC, hybB, hybA, hybO, yghW, [yghZ] |
| * | * | ÷ | NC_007779 | 3261134–3262332 | 3262337 | 6–1204 | 330 [0] | [0] 260 | insH–[tdcD] | insH, [tdcD] |
| Unassigned new junction evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 273179 = | NA (NA) | 242 (0.800) | 125/180 | NT | 72.2% | coding (1109/1146 nt) | ykfC | hypothetical protein |
| ? | NC_007779 | 657877 = | 93 (0.310) | coding (164/210 nt) | cspE | DNA‑binding transcriptional repressor | |||||
| * | ? | NC_007779 | = 274373 | NA (NA) | 180 (0.600) | 105/180 | NT | 66.4% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/S‑methylmethionine transporter |
| ? | NC_007779 | = 657880 | 91 (0.300) | coding (167/210 nt) | cspE | DNA‑binding transcriptional repressor | |||||
| * | ? | NC_007779 | 289856 = | NA (NA) | 222 (1.160) | 99/114 | NT | 100% | intergenic (‑327/+17) | argF/insB | ornithine carbamoyltransferase 2, chain F/IS1 transposase InsAB' |
| ? | NC_007779 | = 2176982 | 0 (0.000) | intergenic (‑281/‑69) | gatB/insH | PTS system galactitol‑specific transporter subunit IIB/IS5 element protein | |||||
| * | ? | NC_007779 | 380484 = | NA (NA) | 266 (0.880) | 130/180 | NT | NA | intergenic (‑418/‑46) | yaiO/insC | hypothetical protein/IS2 insertion element repressor InsA |
| ? | NC_007779 | = 381407 | NA (NA) | coding (510/906 nt) | insD | IS2 insertion element transposase InsAB' | |||||
| * | ? | NC_007779 | 380484 = | NA (NA) | 6 (0.020) | 6/180 | NT | 1.9% | intergenic (‑418/‑46) | yaiO/insC | hypothetical protein/IS2 insertion element repressor InsA |
| ? | NC_007779 | 431208 = | 316 (1.050) | coding (30/885 nt) | tsx | nucleoside channel, receptor of phage T6 and colicin K | |||||
| * | ? | NC_007779 | 381401 = | NA (NA) | 263 (0.890) | 132/176 | NT | NA | coding (504/906 nt) | insD | IS2 insertion element transposase InsAB' |
| ? | NC_007779 | = 381812 | NA (NA) | coding (303/387 nt) | yaiF | hypothetical protein | |||||
| * | ? | NC_007779 | = 381814 | NA (NA) | 3 (0.010) | 3/180 | NT | 0.94% | coding (301/387 nt) | yaiF | hypothetical protein |
| ? | NC_007779 | = 431212 | 315 (1.050) | coding (26/885 nt) | tsx | nucleoside channel, receptor of phage T6 and colicin K | |||||
| * | ? | NC_007779 | = 608570 | NA (NA) | 235 (0.810) | 119/174 | NT | 76.2% | intergenic (+170/+112) | insL/entD | IS186/IS421 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_007779 | 1305025 = | 76 (0.250) | coding (413/921 nt) | oppB | oligopeptide transporter subunit | |||||
| * | ? | NC_007779 | = 654213 | 0 (0.000) | 278 (0.980) | 140/170 | NT | 100% | intergenic (+448/‑68) | citB/insH | DNA‑binding response regulator in two‑component regulatory system with citA/IS5 element protein |
| ? | NC_007779 | 655413 = | 0 (0.000) | intergenic (+152/‑1566) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A | |||||
| * | ? | NC_007779 | 1209367 = | 212 (0.700) | 50 (0.200) | 41/148 | NT | 23.7% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_007779 | 1211196 = | 148 (0.600) | intergenic (‑500/‑66) | tfaE/pin | tail fiber assembly protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | = 1209382 | 213 (0.710) | 49 (0.200) | 40/148 | NT | 23.3% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | NC_007779 | = 1211179 | 148 (0.600) | intergenic (‑483/‑83) | tfaE/pin | tail fiber assembly protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | 1221489 = | 2 (0.010) | 276 (0.940) | 127/176 | NT | 99.3% | intergenic (+711/+2393) | ymgF/ymgD | hypothetical protein/hypothetical protein |
| ? | NC_007779 | 1301041 = | NA (NA) | intergenic (+219/‑89) | ychE/insC | inner membrane protein/IS2 element protein | |||||
| * | ? | NC_007779 | = 1221495 | 0 (0.000) | 239 (0.790) | 119/180 | NT | 100% | intergenic (+717/+2387) | ymgF/ymgD | hypothetical protein/hypothetical protein |
| ? | NC_007779 | = 1302369 | NA (NA) | intergenic (+11/‑527) | insD/oppA | IS2 element protein/oligopeptide transporter subunit | |||||
| * | ? | NC_007779 | = 1305037 | 80 (0.270) | 197 (0.680) | 124/172 | NT | 72.0% | coding (425/921 nt) | oppB | oligopeptide transporter subunit |
| ? | NC_007779 | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/transposase | |||||
| * | ? | NC_007779 | 1397758 = | NA (NA) | 321 (1.060) | 152/180 | NT | 100% | intergenic (‑122/‑32) | ynaI/insH | inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_007779 | 1672777 = | 0 (0.000) | intergenic (+111/‑313) | ynfM/asr | transporter/acid shock‑inducible periplasmic protein | |||||
| * | ? | NC_007779 | = 1672780 | 0 (0.000) | 276 (0.920) | 128/180 | NT | 100% | intergenic (+114/‑310) | ynfM/asr | transporter/acid shock‑inducible periplasmic protein |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑289/+146) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein | |||||
| * | ? | NC_007779 | 1907280 = | 12 (0.040) | 259 (0.860) | 128/180 | NT | 95.6% | intergenic (+307/‑122) | yobD/yebN | inner membrane protein/inner membrane protein |
| ? | NC_007779 | = 2412225 | NA (NA) | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
| * | ? | NC_007779 | = 1907288 | 8 (0.030) | 272 (0.900) | 128/180 | NT | 97.1% | intergenic (+315/‑114) | yobD/yebN | inner membrane protein/inner membrane protein |
| ? | NC_007779 | 2411458 = | NA (NA) | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein | |||||
| * | ? | NC_007779 | 1910343 = | 334 (1.110) | 8 (0.030) | 7/178 | NT | 2.4% | coding (138/144 nt) | yobG | hypothetical protein |
| ? | NC_007779 | = 2412224 | NA (NA) | intergenic (‑54/‑783) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
| * | ? | NC_007779 | 1980091 = | 0 (0.000) | 225 (0.750) | 107/180 | NT | 100% | intergenic (‑171/+264) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑289/+146) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein | |||||
| * | ? | NC_007779 | = 1980095 | 0 (0.000) | 274 (0.920) | 136/178 | NT | 100% | intergenic (‑175/+260) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | 2176984 = | NA (NA) | intergenic (‑283/‑67) | gatB/insH | PTS system galactitol‑specific transporter subunit IIB/IS5 element protein | |||||
| * | ? | NC_007779 | 2178209 = | 0 (0.000) | 238 (0.790) | 122/180 | NT | 100% | intergenic (+178/+184) | insH/gatZ | IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| ? | NC_007779 | = 2412225 | NA (NA) | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
| * | ? | NC_007779 | 2320794 = | NA (NA) | 238 (0.790) | 115/180 | NT | 100% | intergenic (+633/+11) | rcsB/insD | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein |
| ? | NC_007779 | = 2589834 | 0 (0.000) | intergenic (+470/‑69) | acrD/yffB | aminoglycoside/multidrug efflux system/hypothetical protein | |||||
| * | ? | NC_007779 | = 2322124 | NA (NA) | 312 (1.040) | 133/180 | NT | 100% | intergenic (‑91/‑2589) | insC/atoS | IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC |
| ? | NC_007779 | 2589830 = | 0 (0.000) | intergenic (+466/‑73) | acrD/yffB | aminoglycoside/multidrug efflux system/hypothetical protein | |||||
| * | ? | NC_007779 | 2411458 = | NA (NA) | 16 (0.050) | 12/180 | NT | 4.6% | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | 2941519 = | 334 (1.110) | intergenic (‑296/+55) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | 2411458 = | NA (NA) | 301 (1.000) | 144/180 | NT | 93.5% | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | = 2985055 | 21 (0.070) | coding (553/1230 nt) | yqeG | transporter | |||||
| * | ? | NC_007779 | 2411459 = | NA (NA) | 7 (0.020) | 7/178 | NT | 2.4% | intergenic (‑148/+14) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | 2941449 = | 294 (0.980) | intergenic (‑226/+125) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | = 2412224 | NA (NA) | 7 (0.020) | 7/178 | NT | 2.3% | intergenic (‑54/‑783) | insA/yfbQ | IS1 element protein/aminotransferase |
| ? | NC_007779 | = 2941459 | 296 (0.980) | intergenic (‑236/+115) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | = 2412225 | NA (NA) | 16 (0.050) | 14/180 | NT | 4.7% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase |
| ? | NC_007779 | = 2941527 | 328 (1.090) | intergenic (‑304/+47) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | = 2412225 | NA (NA) | 294 (0.980) | 139/180 | NT | 94.8% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase |
| ? | NC_007779 | 2985047 = | 16 (0.050) | coding (545/1230 nt) | yqeG | transporter | |||||
| * | ? | NC_007779 | 3147474 = | 0 (0.000) | 306 (1.020) | 156/180 | NT | 100% | coding (922/1041 nt) | yghZ | aldo‑keto reductase |
| ? | NC_007779 | = 3262328 | NA (NA) | coding (1188/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | NC_007779 | = 3186081 | NA (NA) | 323 (1.080) | 149/178 | NT | 96.7% | coding (26/2466 nt) | yqiG | outer membrane usher protein |
| ? | NC_007779 | 3512753 = | 11 (0.040) | coding (529/1026 nt) | cytR | DNA‑binding transcriptional dual regulator | |||||
| * | ? | NC_007779 | = 3261133 | 0 (0.000) | 300 (1.070) | 138/168 | NT | 100% | intergenic (‑59/‑69) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | = 3748109 | NA (NA) | intergenic (+150/+962) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | 3261134 = | NA (NA) | 296 (0.980) | 148/180 | NT | 100% | intergenic (‑60/‑68) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | 3265774 = | 0 (0.000) | coding (110/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent | |||||
| * | ? | NC_007779 | 3261135 = | NA (NA) | 244 (0.820) | 123/178 | NT | 100% | intergenic (‑61/‑67) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | 3262338 = | 0 (0.000) | coding (1178/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | NC_007779 | = 3265777 | 0 (0.000) | 355 (1.180) | 154/180 | NT | 100% | coding (107/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent |
| ? | NC_007779 | 3365411 = | NA (NA) | intergenic (+368/+146) | yhcD/insH | outer membrane protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_007779 | = 3512759 | 13 (0.040) | 330 (1.110) | 153/178 | NT | 96.3% | coding (535/1026 nt) | cytR | DNA‑binding transcriptional dual regulator |
| ? | NC_007779 | = 3744262 | NA (NA) | intergenic (‑90/+31) | insC/yidZ | IS2 element protein/DNA‑binding transcriptional regulator | |||||
| * | ? | NC_007779 | = 3744263 | NA (NA) | 302 (1.000) | 128/180 | NT | 99.7% | intergenic (‑91/+30) | insC/yidZ | IS2 element protein/DNA‑binding transcriptional regulator |
| ? | NC_007779 | 3903274 = | 1 (0.000) | coding (37/825 nt) | bax | hypothetical protein | |||||
| * | ? | NC_007779 | = 3746910 | 0 (0.000) | 291 (1.010) | 136/172 | NT | 100% | intergenic (‑508/‑69) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
| ? | NC_007779 | 3748110 = | 0 (0.000) | intergenic (+151/+961) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | 3746911 = | NA (NA) | 370 (1.230) | 142/180 | NT | 99.7% | intergenic (‑509/‑68) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
| ? | NC_007779 | = 3748646 | 1 (0.000) | intergenic (+687/+425) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | = 3748105 | NA (NA) | 304 (1.010) | 153/180 | NT | 100% | intergenic (+146/+966) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| ? | NC_007779 | 3748643 = | 0 (0.000) | intergenic (+684/+428) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | = 3903279 | 2 (0.010) | 285 (0.960) | 136/178 | NT | 99.3% | coding (42/825 nt) | bax | hypothetical protein |
| ? | NC_007779 | = 4504190 | NA (NA) | intergenic (+10/‑89) | insD/yjgW | IS2 insertion element transposase InsAB'/hypothetical protein | |||||
| * | ? | NC_007779 | 3987186 = | NA (NA) | 320 (1.070) | 148/178 | NT | 100% | intergenic (‑732/‑31) | slp/insH | outer membrane lipoprotein/IS5 transposase and trans‑activator |
| ? | NC_007779 | = 4009203 | 0 (0.000) | coding (1379/1623 nt) | yhiJ | hypothetical protein | |||||
| * | ? | NC_007779 | = 3988379 | NA (NA) | 300 (1.000) | 135/180 | NT | 100% | coding (746/783 nt) | yhiS | hypothetical protein |
| ? | NC_007779 | 4009199 = | 0 (0.000) | coding (1375/1623 nt) | yhiJ | hypothetical protein | |||||
| * | ? | NC_007779 | = 4310362 | 0 (0.000) | 306 (1.060) | 134/172 | NT | 100% | intergenic (‑286/‑69) | yjcS/insH | alkyl sulfatase/IS5 element protein |
| ? | NC_007779 | 4311562 = | 0 (0.000) | coding (916/1029 nt) | alsK | D‑allose kinase | |||||
| * | ? | NC_007779 | 4310363 = | NA (NA) | 332 (1.100) | 147/180 | NT | 100% | intergenic (‑287/‑68) | yjcS/insH | alkyl sulfatase/IS5 element protein |
| ? | NC_007779 | 4353540 = | 0 (0.000) | intergenic (‑118/+453) | dcuB/dcuR | C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_007779 | = 4311557 | NA (NA) | 288 (0.960) | 142/180 | NT | 100% | coding (921/1029 nt) | alsK | D‑allose kinase |
| ? | NC_007779 | = 4353543 | 0 (0.000) | intergenic (‑121/+450) | dcuB/dcuR | C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_007779 | 4355060 = | 0 (0.000) | 342 (1.130) | 147/180 | NT | 100% | coding (1281/1632 nt) | dcuS | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| ? | NC_007779 | 4502861 = | NA (NA) | intergenic (+241/‑46) | intB/insC | integrase/IS2 insertion element repressor InsA | |||||
| * | ? | NC_007779 | = 4355066 | 8 (0.030) | 272 (0.920) | 134/176 | NT | 97.2% | coding (1275/1632 nt) | dcuS | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| ? | NC_007779 | = 4504189 | NA (NA) | intergenic (+9/‑90) | insD/yjgW | IS2 insertion element transposase InsAB'/hypothetical protein | |||||
| * | ? | NC_007779 | 4547362 = | 249 (0.830) | 5 (0.020) | 5/162 | NT | 2.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779 | 4547676 = | 278 (1.020) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779 | = 4547370 | 254 (0.840) | 7 (0.030) | 7/162 | NT | 2.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779 | = 4547666 | 278 (1.020) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||