mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 51,167 | A→T | 3.8% | L19* (TTG→TAG) | apaH ← | diadenosine tetraphosphatase |
| RA | 66,457 | C→A | 100% | V32F (GTT→TTT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase |
| RA | 97,880 | C→T | 100% | S265F (TCC→TTC) | murD → | UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase |
| RA | 108,496 | A→T | 24.6% | E73V (GAG→GTG) | secA → | preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon |
| RA | 167,632 | C→A | 100% | P50Q (CCG→CAG) | fhuA → | ferrichrome outer membrane transporter |
| RA | 274,547 | A→G | 100% | intergenic (‑206/‑2) | insH ← / → mmuP | IS5 transposase and trans‑activator/S‑methylmethionine transporter |
| MC JC | 274,733 | Δ97,240 bp | 100% | [mmuP]–[mhpD] | 90 genes [mmuP], mmuM, afuC, afuB, insB, insA, ykgN, yagB, yagA, yagE, yagF, yagG, yagH, yagI, argF, insB, insA, yagJ, yagK, yagL, yagM, yagN, intF, yagP, yagQ, yagR, yagS, yagT, yagU, ykgJ, yagV, yagW, yagX, yagY, yagZ, ykgK, ykgL, Y75_p4288, Y75_p4289, eaeH, insE, insF, ykgA, ykgB, ykgI, ykgC, ykgD, ykgE, ykgF, ykgG, ykgH, betA, betB, betI, betT, yahA, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, [mhpD] |
|
| RA | 501,581 | A→T | 16.2% | D294E (GAT→GAA) | ybaL ← | transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 547,694 | A→G | 100% | intergenic (+123/‑1156) | fdrA → / → ylbF | acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein |
| RA | 547,831 | +G | 100% | intergenic (+260/‑1019) | fdrA → / → ylbF | acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 569,996 | G→C | 100% | intergenic (+345/‑120) | ybcK → / → ybcL | recombinase/kinase inhibitor |
| RA | 749,354 | C→A | 100% | P17P (CCG→CCT) | ybgO ← | fimbrial‑like adhesin protein |
| RA | 758,562 | T→A | 8.6% | L151H (CTC→CAC) | sdhB → | succinate dehydrogenase, FeS subunit |
| RA | 887,234 | C→A | 100% | A176A (GCG→GCT) | ybjJ ← | transporter |
| RA | 987,574 | G→T | 100% | intergenic (‑170/+433) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | diguanylate cyclase |
| RA | 1,097,580 | C→T | 18.4% | intergenic (+329/+226) | ycdU → / ← serX | inner membrane protein/tRNA‑Ser |
| RA | 1,170,573 | C→T | 100% | intergenic (‑164/‑77) | ycfQ ← / → ycfR | DNA‑binding transcriptional regulator/hypothetical protein |
| RA | 1,197,797 | C→T | 7.6% | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,197,809 | C→T | 6.3% | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,197,822 | T→C | 4.8% | L375L (TTA→CTA) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,197,824 | A→G | 4.8% | L375L (TTA→TTG) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,197,854 | C→T | 1.7% | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,197,857 | G→C | 1.7% | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase,‑specific for NADP+ |
| RA | 1,213,001 | T→C | 6.2% | intergenic (+245/+256) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,013 | T→C | 5.8% | intergenic (+257/+244) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,026 | C→T | 4.4% | intergenic (+270/+231) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,028 | G→A | 4.4% | intergenic (+272/+229) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,058 | T→C | 2.0% | intergenic (+302/+199) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,213,061 | C→G | 2.1% | intergenic (+305/+196) | mcrA → / ← elbA | 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein |
| RA | 1,288,364 | G→A | 100% | A27T (GCG→ACG) | ychS → | hypothetical protein |
| RA | 1,288,370 | A→G | 100% | K29E (AAG→GAG) | ychS → | hypothetical protein |
| RA | 1,288,462 | T→C | 100% | S59S (AGT→AGC) | ychS → | hypothetical protein |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,318,876 | G→A | 100% | P21S (CCT→TCT) | trpA ← | tryptophan synthase subunit alpha |
| RA | 1,332,989 | G→T | 1.8% | W76C (TGG→TGT) | topA → | DNA topoisomerase I, omega subunit |
| MC JC | 1,413,639 | Δ23,060 bp | 100% | [ydaO]–ynaE | 30 genes [ydaO], intR, ydaQ, ydaC, lar, recT, recE, racC, ydaE, kil, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, insH, stfR, tfaR, pinR, ynaE |
|
| RA | 1,467,852 | G→A | 1.6% | intergenic (+1077/+1783) | paaY → / ← insD | hexapeptide repeat acetyltransferase/IS2 insertion element transposase InsAB' |
| RA | 1,483,588 | G→A | 100% | L322L (CTG→CTA) | ynbD → | phosphatase, inner membrane protein |
| RA | 1,496,775 | Δ1 bp | 100% | coding (11/924 nt) | ydcI ← | DNA‑binding transcriptional regulator |
| RA | 1,555,625 | G→A | 9.9% | intergenic (‑73/+61) | adhP ← / ← sfcA | alcohol dehydrogenase, 1‑propanol preferring/malate dehydrogenase, NAD‑requiring |
| RA | 1,615,814 | C→A | 100% | D202Y (GAC→TAC) | yneI ← | aldehyde dehydrogenase |
| RA | 1,669,599 | Δ1 bp | 100% | coding (680/1221 nt) | dgsA ← | DNA‑binding transcriptional repressor |
| JC | 1,724,327 | Δ3 bp | 9.5% | coding (493‑495/2013 nt) | ydhK → | inner membrane protein |
| RA | 1,844,073 | G→A | 100% | intergenic (‑224/‑12) | ynjH ← / → gdhA | hypothetical protein/glutamate dehydrogenase, NADP‑specific |
| RA | 1,918,872 | T→A | 100% | S301T (TCC→ACC) | yebS → | inner membrane protein |
| RA | 1,973,476 | G→A | 100% | L310L (CTC→CTT) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 2,005,401 | C→T | 100% | E115K (GAA→AAA) | fliC ← | flagellar filament structural protein |
| RA | 2,170,094 | C→A | 100% | intergenic (‑437/+32) | ogrK ← / ← yegR | DNA‑binding transcriptional regulator/hypothetical protein |
| RA | 2,178,210 | A→C | 4.1% | intergenic (+179/+183) | insH → / ← gatZ | IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| RA | 2,406,075 | C→T | 100% | V51I (GTT→ATT) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,416,102 | G→A | 100% | L233L (CTG→TTG) | yfbS ← | transporter |
| RA | 2,538,628 | C→T | 100% | T258T (ACC→ACT) | cysK → | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,865,228 | A→G | 4.1% | L288P (CTG→CCG) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| JC | 2,865,274 | +46 bp | 22.2% | coding (817/876 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| JC | 2,865,278 | +92 bp | 8.3% | coding (813/876 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,111 | A→G | 100% | intergenic (‑21/+159) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/outer membrane lipoprotein |
| RA | 3,003,330 | G→A | 100% | L371L (CTC→CTT) | ygeV ← | DNA‑binding transcriptional regulator |
| RA | 3,049,815 | G→T | 100% | R387S (CGC→AGC) | visC ← | oxidoreductase |
| RA | 3,397,813 | C→G | 100% | D141H (GAT→CAT) | yhdE ← | hypothetical protein |
| RA | 3,449,851 | G→A | 21.1% | A494V (GCG→GTG) | rpoC ← | RNA polymerase, beta prime subunit |
| RA | 3,451,634 | T→A | 3.3% | Q1268L (CAG→CTG) | rpoB ← | RNA polymerase subunit beta |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| RA | 3,750,122 | Δ1 bp | 97.2% | coding (365/1416 nt) | tnaA ← | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,750,123 | C→T | 2.8% | G122S (GGC→AGC) | tnaA ← | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| MC JC | 3,750,591 | Δ1,199 bp | 100% | insH | insH | |
| RA | 3,898,657 | C→G | 100% | L259V (CTG→GTG) | yiaJ → | DNA‑binding transcriptional repressor |
| MC JC | 3,958,123 | Δ34 bp | 100% | coding (1156‑1189/1287 nt) | dctA → | C4‑dicarboxylic acid, orotate and citrate transporter |
| RA | 4,079,921 | C→T | 10.9% | R38C (CGC→TGC) | glpR → | DNA‑binding transcriptional repressor |
| RA | 4,090,749 | A→T | 100% | Q135L (CAG→CTG) | malQ → | 4‑alpha‑glucanotransferase |
| RA | 4,165,991 | A→C | 100% | K43T (AAA→ACA) | rpsL → | 30S ribosomal protein S12 |
| RA | 4,200,197 | A→G | 14.9% | K271E (AAA→GAA) | rpoA → | RNA polymerase subunit alpha |
| MC JC | 4,310,363 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,371,271 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,371,467 | Δ1 bp | 18.0% | intergenic (‑202/+104) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,546,535 | T→A | 100% | intergenic (+296/‑182) | fimB → / → fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 2176983–2178181 | 2178208 | 28–1226 | 368 [0] | [0] 396 | insH | insH |
| * | * | ÷ | NC_007779 | 3128828–3130002 | 3147473 | 17472–18646 | 211 [207] | [0] 373 | [yghO]–[yghZ] | 19 genes [yghO], insH, yghQ, yghR, yghS, yghT, pitB, gss, yghU, hybG, hybF, hybE, hybD, hybC, hybB, hybA, hybO, yghW, [yghZ] |
| Unassigned new junction evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 15391 = | NA (NA) | 19 (0.070) | 16/172 | NT | 7.1% | intergenic (+93/‑54) | dnaJ/insL | chaperone Hsp40, co‑chaperone with DnaK/IS186/IS421 transposase |
| ? | NC_007779 | = 458023 | 261 (0.960) | intergenic (+99/‑89) | clpX/lon | ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La | |||||
| * | ? | NC_007779 | 273179 = | NA (NA) | 354 (1.310) | 154/180 | NT | 86.1% | coding (1109/1146 nt) | ykfC | hypothetical protein |
| ? | NC_007779 | 657843 = | 57 (0.210) | coding (130/210 nt) | cspE | DNA‑binding transcriptional repressor | |||||
| * | ? | NC_007779 | 289856 = | NA (NA) | 218 (1.270) | 91/114 | NT | 100% | intergenic (‑327/+17) | argF/insB | ornithine carbamoyltransferase 2, chain F/IS1 transposase InsAB' |
| ? | NC_007779 | = 2176982 | 0 (0.000) | intergenic (‑281/‑69) | gatB/insH | PTS system galactitol‑specific transporter subunit IIB/IS5 element protein | |||||
| * | ? | NC_007779 | 289859 = | NA (NA) | 3 (0.010) | 3/178 | NT | 1.0% | intergenic (‑330/+14) | argF/insB | ornithine carbamoyltransferase 2, chain F/IS1 transposase InsAB' |
| ? | NC_007779 | = 2941453 | 292 (1.080) | intergenic (‑230/+121) | gcvA/ygdI | DNA‑binding transcriptional dual regulator/hypothetical protein | |||||
| * | ? | NC_007779 | 380484 = | NA (NA) | 255 (0.940) | 128/180 | NT | NA | intergenic (‑418/‑46) | yaiO/insC | hypothetical protein/IS2 insertion element repressor InsA |
| ? | NC_007779 | = 381407 | NA (NA) | coding (510/906 nt) | insD | IS2 insertion element transposase InsAB' | |||||
| * | ? | NC_007779 | 380484 = | NA (NA) | 25 (0.090) | 24/180 | NT | 6.2% | intergenic (‑418/‑46) | yaiO/insC | hypothetical protein/IS2 insertion element repressor InsA |
| ? | NC_007779 | 675203 = | 378 (1.400) | coding (3/2583 nt) | leuS | leucyl‑tRNA synthetase | |||||
| * | ? | NC_007779 | 381401 = | NA (NA) | 234 (0.880) | 116/176 | NT | NA | coding (504/906 nt) | insD | IS2 insertion element transposase InsAB' |
| ? | NC_007779 | = 381812 | NA (NA) | coding (303/387 nt) | yaiF | hypothetical protein | |||||
| * | ? | NC_007779 | = 381814 | NA (NA) | 30 (0.110) | 28/180 | NT | 7.4% | coding (301/387 nt) | yaiF | hypothetical protein |
| ? | NC_007779 | = 675207 | 378 (1.400) | intergenic (‑2/‑233) | leuS/ybeL | leucyl‑tRNA synthetase/hypothetical protein | |||||
| * | ? | NC_007779 | 458011 = | 272 (1.000) | 3 (0.010) | 3/174 | NT | 1.1% | intergenic (+87/‑101) | clpX/lon | ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_007779 | 607234 = | NA (NA) | intergenic (+23/‑54) | hokE/insL | toxic polypeptide/IS186/IS421 transposase | |||||
| * | ? | NC_007779 | 458011 = | 272 (1.000) | 21 (0.080) | 21/174 | NT | 7.4% | intergenic (+87/‑101) | clpX/lon | ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_007779 | = 608570 | NA (NA) | intergenic (+170/+112) | insL/entD | IS186/IS421 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_007779 | = 458023 | 261 (0.960) | 3 (0.010) | 3/172 | NT | 1.2% | intergenic (+99/‑89) | clpX/lon | ATPase and‑specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| ? | NC_007779 | = 608570 | NA (NA) | intergenic (+170/+112) | insL/entD | IS186/IS421 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_007779 | = 608570 | NA (NA) | 188 (0.720) | 112/174 | NT | 75.0% | intergenic (+170/+112) | insL/entD | IS186/IS421 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_007779 | 1305025 = | 65 (0.240) | coding (413/921 nt) | oppB | oligopeptide transporter subunit | |||||
| * | ? | NC_007779 | = 654213 | 0 (0.000) | 384 (1.500) | 146/170 | NT | 100% | intergenic (+448/‑68) | citB/insH | DNA‑binding response regulator in two‑component regulatory system with citA/IS5 element protein |
| ? | NC_007779 | 655413 = | 0 (0.000) | intergenic (+152/‑1566) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A | |||||
| * | ? | NC_007779 | 654213 = | NA (NA) | 273 (1.010) | 132/180 | NT | 82.2% | intergenic (+448/‑68) | citB/insH | DNA‑binding response regulator in two‑component regulatory system with citA/IS5 element protein |
| ? | NC_007779 | = 657846 | 59 (0.220) | coding (133/210 nt) | cspE | DNA‑binding transcriptional repressor | |||||
| * | ? | NC_007779 | = 655407 | NA (NA) | 6 (0.020) | 5/180 | NT | 1.7% | intergenic (+146/‑1572) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A |
| ? | NC_007779 | = 656438 | 346 (1.280) | intergenic (+1177/‑541) | insH/crcA | IS5 element protein/palmitoyl transferase for Lipid A | |||||
| * | ? | NC_007779 | 1209367 = | 245 (0.910) | 19 (0.090) | 18/148 | NT | 8.6% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_007779 | 1211196 = | 204 (0.920) | intergenic (‑500/‑66) | tfaE/pin | tail fiber assembly protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | = 1209382 | 241 (0.890) | 26 (0.120) | 26/148 | NT | 11.4% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | NC_007779 | = 1211179 | 204 (0.920) | intergenic (‑483/‑83) | tfaE/pin | tail fiber assembly protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | 1221489 = | 5 (0.020) | 279 (1.050) | 144/176 | NT | 98.3% | intergenic (+711/+2393) | ymgF/ymgD | hypothetical protein/hypothetical protein |
| ? | NC_007779 | 1301041 = | NA (NA) | intergenic (+219/‑89) | ychE/insC | inner membrane protein/IS2 element protein | |||||
| * | ? | NC_007779 | = 1221495 | 1 (0.000) | 220 (0.810) | 123/180 | NT | 99.5% | intergenic (+717/+2387) | ymgF/ymgD | hypothetical protein/hypothetical protein |
| ? | NC_007779 | = 1302369 | NA (NA) | intergenic (+11/‑527) | insD/oppA | IS2 element protein/oligopeptide transporter subunit | |||||
| * | ? | NC_007779 | = 1305037 | 61 (0.230) | 206 (0.800) | 120/172 | NT | 57.2% | coding (425/921 nt) | oppB | oligopeptide transporter subunit |
| ? | NC_007779 | 2519723 = | 250 (0.970) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/transposase | |||||
| * | ? | NC_007779 | 1397758 = | NA (NA) | 236 (0.870) | 112/180 | NT | 100% | intergenic (‑122/‑32) | ynaI/insH | inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_007779 | 1672777 = | 0 (0.000) | intergenic (+111/‑313) | ynfM/asr | transporter/acid shock‑inducible periplasmic protein | |||||
| * | ? | NC_007779 | = 1672780 | 0 (0.000) | 248 (0.920) | 124/180 | NT | 100% | intergenic (+114/‑310) | ynfM/asr | transporter/acid shock‑inducible periplasmic protein |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑289/+146) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein | |||||
| * | ? | NC_007779 | 1907280 = | 13 (0.050) | 205 (0.760) | 111/180 | NT | 94.0% | intergenic (+307/‑122) | yobD/yebN | inner membrane protein/inner membrane protein |
| ? | NC_007779 | = 2412225 | NA (NA) | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
| * | ? | NC_007779 | = 1907288 | 12 (0.040) | 235 (0.870) | 124/180 | NT | 95.1% | intergenic (+315/‑114) | yobD/yebN | inner membrane protein/inner membrane protein |
| ? | NC_007779 | 2411458 = | NA (NA) | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein | |||||
| * | ? | NC_007779 | = 1980055 | 121 (0.450) | 5 (0.020) | 4/172 | NT | 2.6% | intergenic (‑135/+300) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | = 1981441 | 253 (0.980) | intergenic (‑70/‑449) | insH/yecG | IS5 element protein/universal stress protein | |||||
| * | ? | NC_007779 | 1980091 = | 1 (0.000) | 190 (0.700) | 90/180 | NT | 99.5% | intergenic (‑171/+264) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑289/+146) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein | |||||
| * | ? | NC_007779 | = 1980095 | 1 (0.000) | 293 (1.090) | 137/178 | NT | 99.7% | intergenic (‑175/+260) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | 2176984 = | NA (NA) | intergenic (‑283/‑67) | gatB/insH | PTS system galactitol‑specific transporter subunit IIB/IS5 element protein | |||||
| * | ? | NC_007779 | 1980105 = | 29 (0.110) | 7 (0.030) | 5/168 | NT | 6.4% | intergenic (‑185/+250) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein |
| ? | NC_007779 | 1980164 = | 179 (0.710) | intergenic (‑244/+191) | flhD/insH | DNA‑binding transcriptional dual regulator/IS5 element protein | |||||
| * | ? | NC_007779 | 2178209 = | 0 (0.000) | 289 (1.070) | 137/180 | NT | 100% | intergenic (+178/+184) | insH/gatZ | IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| ? | NC_007779 | = 2412225 | NA (NA) | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
| * | ? | NC_007779 | 2319506 = | 290 (1.070) | 3 (0.010) | 3/180 | NT | 1.0% | intergenic (+12/‑5) | rcsD/rcsB | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC/DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN |
| ? | NC_007779 | = 2322124 | NA (NA) | intergenic (‑91/‑2589) | insC/atoS | IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC | |||||
| * | ? | NC_007779 | = 2319510 | 294 (1.090) | 5 (0.020) | 5/180 | NT | 1.7% | intergenic (+16/‑1) | rcsD/rcsB | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC/DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN |
| ? | NC_007779 | 2320794 = | NA (NA) | intergenic (+633/+11) | rcsB/insD | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein | |||||
| * | ? | NC_007779 | = 2320794 | 0 (0.000) | 245 (0.970) | 120/168 | NT | 100% | intergenic (+633/+11) | rcsB/insD | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein |
| ? | NC_007779 | 2322131 = | 0 (0.000) | intergenic (‑98/‑2582) | insC/atoS | IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC | |||||
| * | ? | NC_007779 | 2320794 = | NA (NA) | 257 (0.950) | 122/180 | NT | 100% | intergenic (+633/+11) | rcsB/insD | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein |
| ? | NC_007779 | = 2589834 | 0 (0.000) | intergenic (+470/‑69) | acrD/yffB | aminoglycoside/multidrug efflux system/hypothetical protein | |||||
| * | ? | NC_007779 | = 2322124 | NA (NA) | 271 (1.000) | 135/180 | NT | 100% | intergenic (‑91/‑2589) | insC/atoS | IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC |
| ? | NC_007779 | 2589830 = | 0 (0.000) | intergenic (+466/‑73) | acrD/yffB | aminoglycoside/multidrug efflux system/hypothetical protein | |||||
| * | ? | NC_007779 | = 2411458 | 293 (1.080) | 4 (0.020) | 4/162 | NT | 1.4% | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | 2412235 = | 288 (1.180) | intergenic (‑65/‑772) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
| * | ? | NC_007779 | 2411458 = | NA (NA) | 293 (1.080) | 144/180 | NT | 95.4% | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | = 2985055 | 14 (0.050) | coding (553/1230 nt) | yqeG | transporter | |||||
| * | ? | NC_007779 | = 2412225 | NA (NA) | 242 (0.890) | 119/180 | NT | 96.4% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/aminotransferase |
| ? | NC_007779 | 2985047 = | 9 (0.030) | coding (545/1230 nt) | yqeG | transporter | |||||
| * | ? | NC_007779 | 2519723 = | NA (NA) | 38 (0.150) | 32/172 | NT | 16.8% | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/transposase |
| ? | NC_007779 | 3175156 = | 197 (0.730) | coding (334/828 nt) | cpdA | cyclic 3',5'‑adenosine monophosphate phosphodiesterase | |||||
| * | ? | NC_007779 | = 2521060 | NA (NA) | 26 (0.100) | 23/176 | NT | 12.3% | intergenic (+171/+29) | insL/yfeA | transposase/diguanylate cyclase |
| ? | NC_007779 | = 3175166 | 189 (0.700) | coding (324/828 nt) | cpdA | cyclic 3',5'‑adenosine monophosphate phosphodiesterase | |||||
| * | ? | NC_007779 | 3147474 = | 0 (0.000) | 294 (1.090) | 146/180 | NT | 100% | coding (922/1041 nt) | yghZ | aldo‑keto reductase |
| ? | NC_007779 | = 3262328 | NA (NA) | coding (1188/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | NC_007779 | = 3186081 | NA (NA) | 275 (1.030) | 144/178 | NT | 93.6% | coding (26/2466 nt) | yqiG | outer membrane usher protein |
| ? | NC_007779 | 3512753 = | 19 (0.070) | coding (529/1026 nt) | cytR | DNA‑binding transcriptional dual regulator | |||||
| * | ? | NC_007779 | = 3261133 | 1 (0.000) | 258 (1.020) | 134/168 | NT | 99.6% | intergenic (‑59/‑69) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | = 3748109 | NA (NA) | intergenic (+150/+962) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | 3261134 = | NA (NA) | 269 (0.990) | 141/180 | NT | 99.6% | intergenic (‑60/‑68) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | 3265774 = | 1 (0.000) | coding (110/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent | |||||
| * | ? | NC_007779 | 3261135 = | NA (NA) | 210 (0.780) | 115/178 | NT | 99.5% | intergenic (‑61/‑67) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | 3262338 = | 1 (0.000) | coding (1178/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | NC_007779 | = 3265777 | 1 (0.000) | 272 (1.000) | 132/180 | NT | 99.6% | coding (107/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent |
| ? | NC_007779 | 3365411 = | NA (NA) | intergenic (+368/+146) | yhcD/insH | outer membrane protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_007779 | = 3512759 | 15 (0.060) | 232 (0.870) | 117/178 | NT | 94.0% | coding (535/1026 nt) | cytR | DNA‑binding transcriptional dual regulator |
| ? | NC_007779 | = 3744262 | NA (NA) | intergenic (‑90/+31) | insC/yidZ | IS2 element protein/DNA‑binding transcriptional regulator | |||||
| * | ? | NC_007779 | = 3744263 | NA (NA) | 281 (1.040) | 138/180 | NT | 99.6% | intergenic (‑91/+30) | insC/yidZ | IS2 element protein/DNA‑binding transcriptional regulator |
| ? | NC_007779 | 3903274 = | 1 (0.000) | coding (37/825 nt) | bax | hypothetical protein | |||||
| * | ? | NC_007779 | = 3746910 | 0 (0.000) | 285 (1.100) | 128/172 | NT | 100% | intergenic (‑508/‑69) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
| ? | NC_007779 | 3748110 = | 0 (0.000) | intergenic (+151/+961) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | 3746911 = | NA (NA) | 280 (1.030) | 139/180 | NT | 99.6% | intergenic (‑509/‑68) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
| ? | NC_007779 | = 3748646 | 1 (0.000) | intergenic (+687/+425) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | = 3748105 | NA (NA) | 295 (1.090) | 139/180 | NT | 99.3% | intergenic (+146/+966) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| ? | NC_007779 | 3748643 = | 2 (0.010) | intergenic (+684/+428) | insH/tnaA | IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| * | ? | NC_007779 | = 3903279 | 2 (0.010) | 291 (1.090) | 138/178 | NT | 99.3% | coding (42/825 nt) | bax | hypothetical protein |
| ? | NC_007779 | = 4504190 | NA (NA) | intergenic (+10/‑89) | insD/yjgW | IS2 insertion element transposase InsAB'/hypothetical protein | |||||
| * | ? | NC_007779 | 3987186 = | NA (NA) | 316 (1.180) | 150/178 | NT | 99.7% | intergenic (‑732/‑31) | slp/insH | outer membrane lipoprotein/IS5 transposase and trans‑activator |
| ? | NC_007779 | = 4009203 | 1 (0.000) | coding (1379/1623 nt) | yhiJ | hypothetical protein | |||||
| * | ? | NC_007779 | = 3988379 | NA (NA) | 323 (1.190) | 141/180 | NT | 99.4% | coding (746/783 nt) | yhiS | hypothetical protein |
| ? | NC_007779 | 4009199 = | 2 (0.010) | coding (1375/1623 nt) | yhiJ | hypothetical protein | |||||
| * | ? | NC_007779 | 4310363 = | NA (NA) | 253 (0.930) | 125/180 | NT | 99.6% | intergenic (‑287/‑68) | yjcS/insH | alkyl sulfatase/IS5 element protein |
| ? | NC_007779 | 4353540 = | 1 (0.000) | intergenic (‑118/+453) | dcuB/dcuR | C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_007779 | = 4311557 | NA (NA) | 315 (1.160) | 142/180 | NT | 99.7% | coding (921/1029 nt) | alsK | D‑allose kinase |
| ? | NC_007779 | = 4353543 | 1 (0.000) | intergenic (‑121/+450) | dcuB/dcuR | C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_007779 | 4355060 = | 0 (0.000) | 285 (1.050) | 130/180 | NT | 100% | coding (1281/1632 nt) | dcuS | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| ? | NC_007779 | 4502861 = | NA (NA) | intergenic (+241/‑46) | intB/insC | integrase/IS2 insertion element repressor InsA | |||||
| * | ? | NC_007779 | = 4355066 | 7 (0.030) | 272 (1.030) | 133/176 | NT | 97.5% | coding (1275/1632 nt) | dcuS | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| ? | NC_007779 | = 4504189 | NA (NA) | intergenic (+9/‑90) | insD/yjgW | IS2 insertion element transposase InsAB'/hypothetical protein | |||||