mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 706,385 | 1 | .→T | 1.8% | 17.3 ‑1.0 ‑0.0 | 275 | intergenic (+73/‑130) | nagE/glnS | fused N‑acetyl glucosamine‑specific PTS enzyme IICBA components/glutaminyl‑tRNA synthetase |
| * | NC_007779 | 3,731,041 | 1 | .→T | 1.9% | 14.3 ‑0.4 ‑0.0 | 268 | intergenic (+91/‑43) | bglG/bglF | transcriptional antiterminator of the bgl operon/PTS system beta‑glucoside‑specific transporter subunits IIABC |
| * | NC_007779 | 1,716,031 | 1 | .→T | 1.5% | 12.6 ‑0.5 ‑0.3 | 266 | intergenic (+46/‑60) | ydgR/gst | transporter/glutathionine S‑transferase |
| * | NC_007779 | 4,000,535 | 1 | .→A | 1.4% | 11.6 ‑3.4 ‑0.1 | 276 | intergenic (‑231/‑160) | uspA/yhiO | universal stress global response regulator/universal stress (ethanol tolerance) protein B |
| * | NC_007779 | 4,016,769 | 1 | .→C | 1.6% | 7.9 ‑3.8 ‑0.0 | 253 | coding (248/384 nt) | yhhH | hypothetical protein |
| * | NC_007779 | 837,856 | 1 | .→A | 1.2% | 7.8 ‑0.5 ‑0.5 | 260 | coding (1084/1086 nt) | ybiC | dehydrogenase |
| * | NC_007779 | 3,653,996 | 1 | .→G | 0.8% | 3.0 0.0 ‑0.1 | 253 | noncoding (80/87 nt) | leuT | tRNA‑Leu |
| * | NC_007779 | 1,348,546 | 1 | .→T | 0.8% | 2.9 ‑1.4 ‑0.6 | 263 | intergenic (‑90/+146) | gmr/rnb | modulator of Rnase II stability/ribonuclease II |
| * | NC_007779 | 4,036,181 | 1 | .→A | 0.8% | 2.9 0.0 ‑0.1 | 259 | coding (10/1494 nt) | ftsY | fused Signal Recognition Particle (SRP) receptor |
| * | NC_007779 | 781,764 | 1 | .→A | 0.7% | 2.8 ‑1.4 ‑1.4 | 281 | intergenic (+120/‑27) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| * | NC_007779 | 2,082,880 | 1 | .→A | 0.8% | 2.8 ‑0.7 ‑0.1 | 255 | intergenic (‑152/+46) | yeeA/sbmC | inner membrane protein/DNA gyrase inhibitor |
| * | NC_007779 | 2,623,155 | 1 | .→G | 0.8% | 2.8 ‑1.6 ‑0.5 | 250 | coding (1456/2067 nt) | ppk | polyphosphate kinase, component of RNA degradosome |
| * | NC_007779 | 4,345,370 | 1 | .→T | 0.7% | 2.8 0.0 ‑0.4 | 276 | intergenic (‑168/+28) | adiA/melR | biodegradative arginine decarboxylase/DNA‑binding transcriptional dual regulator |
| * | NC_007779 | 1,273,395 | 1 | .→G | 0.8% | 2.5 ‑2.1 ‑0.1 | 263 | coding (32/1101 nt) | chaA | calcium/sodium:proton antiporter |
| * | NC_007779 | 3,689,613 | 1 | .→A | 0.7% | 2.5 0.0 ‑0.1 | 307 | intergenic (+60/+36) | hdfR/trpT | DNA‑binding transcriptional regulator/tRNA‑Trp |
| * | NC_007779 | 4,200,831 | 1 | .→G | 0.7% | 2.5 ‑1.5 ‑0.0 | 272 | intergenic (+31/‑76) | rplQ/yhdN | 50S ribosomal protein L17/hypothetical protein |
| * | NC_007779 | 3,627,544 | 1 | .→T | 0.7% | 2.4 ‑0.7 ‑0.1 | 280 | intergenic (‑33/‑78) | pldB/rhtB | lysophospholipase L(2)/neutral amino‑acid efflux system |
| * | NC_007779 | 3,671,123 | 1 | .→A | 0.8% | 2.4 0.0 ‑0.0 | 255 | coding (73/1266 nt) | rhlB | ATP‑dependent RNA helicase |
| * | NC_007779 | 3,900,676 | 1 | .→G | 0.8% | 2.4 ‑1.8 ‑0.0 | 259 | coding (35/1254 nt) | avtA | valine‑pyruvate aminotransferase |
| * | NC_007779 | 3,447,067 | 1 | .→C | 1.1% | 1.4 ‑2.4 0.0 | 272 | intergenic (‑172/+41) | htrC/rpoC | heat shock protein/RNA polymerase, beta prime subunit |
| * | NC_007779 | 1,050,608 | 0 | T→G | 100.0% | ‑0.1 | 1 | S54A (TCG→GCG) | insB | IS1 transposase InsAB' |
| * | NC_007779 | 4,214,394 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (762/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,395 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (763/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,397 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (765/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,398 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (766/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,399 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (767/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,400 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (768/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,401 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (769/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,402 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (770/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,403 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (771/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,404 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (772/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,405 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (773/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,406 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (774/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,407 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (775/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,408 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (776/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,409 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (777/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,410 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (778/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,411 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (779/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,412 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (780/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,416 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (784/2904 nt) | rrlE | 23S ribosomal RNA |
| * | NC_007779 | 4,214,417 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (785/2904 nt) | rrlE | 23S ribosomal RNA |