mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.25c
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_007779 | 686,495 | 0 | A→C | 13.9% | 70.2 ‑112.2 0.0 | 446 | G199G (GGT→GGG) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 34,111 | 1 | .→T | 1.8% | 15.9 0.0 ‑0.0 | 272 | intergenic (+73/‑189) | carB/caiF | carbamoyl‑phosphate synthase large subunit/DNA‑binding transcriptional activator |
| * | NC_007779 | 3,576,400 | 1 | .→A | 1.1% | 7.7 ‑0.5 ‑0.3 | 261 | intergenic (‑166/+51) | yihL/bipA | DNA‑binding transcriptional regulator/GTP‑binding protein |
| * | NC_007779 | 3,689,613 | 1 | .→A | 1.1% | 7.4 ‑0.5 ‑0.1 | 276 | intergenic (+60/+36) | hdfR/trpT | DNA‑binding transcriptional regulator/tRNA‑Trp |
| * | NC_007779 | 687,133 | 0 | A→C | 3.5% | 7.2 ‑53.0 0.0 | 602 | intergenic (‑42/+128) | gltJ/gltI | glutamate and aspartate transporter subunit/glutamate and aspartate transporter subunit |
| * | NC_007779 | 3,188,902 | 1 | .→A | 0.7% | 2.8 ‑1.8 ‑0.2 | 281 | coding (366/750 nt) | yqiH | periplasmic pilin chaperone |
| * | NC_007779 | 3,334,550 | 1 | .→C | 0.7% | 2.8 ‑1.8 ‑0.3 | 269 | intergenic (+14/‑214) | ispB/sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator |
| * | NC_007779 | 1,019,391 | 0 | A→. | 1.0% | 2.7 0.0 ‑0.8 | 301 | intergenic (+32/+44) | ycbG/ompA | hypothetical protein/outer membrane protein A (3a;II*;G;d) |
| * | NC_007779 | 2,107,010 | 1 | .→A | 0.8% | 2.7 0.0 ‑0.1 | 258 | coding (212/591 nt) | wbbJ | acyl transferase |
| * | NC_007779 | 3,730,081 | 1 | .→G | 0.8% | 2.7 ‑0.7 ‑0.4 | 265 | intergenic (+253/‑33) | phoU/bglG | DNA‑binding transcriptional regulator/transcriptional antiterminator of the bgl operon |
| * | NC_007779 | 4,163,966 | 1 | .→T | 0.8% | 2.7 0.0 ‑0.3 | 253 | intergenic (+157/‑10) | fkpA/yheO | FKBP‑type peptidyl‑prolyl cis‑trans isomerase/DNA‑binding transcriptional regulator |
| * | NC_007779 | 2,945,991 | 1 | .→A | 0.7% | 2.6 0.0 ‑0.0 | 267 | intergenic (‑157/‑52) | mltA/metZ | membrane‑bound lytic murein transglycosylase A/tRNA‑Met |
| * | NC_007779 | 4,059,344 | 1 | .→T | 0.8% | 2.6 0.0 ‑0.0 | 266 | intergenic (‑67/‑266) | yhhY/yhhX | acetyltransferase/oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| * | NC_007779 | 1,772,183 | 1 | .→T | 0.8% | 2.5 ‑0.7 ‑0.1 | 254 | intergenic (+283/‑146) | ydiK/ydiL | inner membrane protein/hypothetical protein |
| * | NC_007779 | 3,800,778 | 1 | .→A | 0.8% | 2.5 ‑1.5 ‑0.3 | 260 | coding (357/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 |
| * | NC_007779 | 3,746,911 | 0 | G→A | 100.0% | 2.4 | 2 | intergenic (‑509/‑68) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
| * | NC_007779 | 3,478,395 | 1 | .→T | 0.8% | 1.9 ‑0.7 ‑0.0 | 259 | intergenic (‑204/+63) | oxyR/argH | DNA‑binding transcriptional dual regulator/argininosuccinate lyase |
| * | NC_007779 | 686,663 | 1 | .→T | 0.4% | 1.8 ‑0.7 ‑1.0 | 566 | coding (429/741 nt) | gltJ | glutamate and aspartate transporter subunit |
| * | NC_007779 | 227,961 | 0 | T→G | 100.0% | 1.6 | 1 | noncoding (2203/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,969 | 0 | A→G | 100.0% | 1.6 | 1 | noncoding (2211/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 1,097,765 | 0 | A→. | 0.6% | 1.6 ‑2.6 ‑0.1 | 535 | intergenic (+514/+41) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779 | 4,015,570 | 0 | T→A | 100.0% | 1.3 | 1 | P156P (CCA→CCT) | yhhI | transposase |
| * | NC_007779 | 4,015,582 | 0 | A→G | 100.0% | 1.3 | 1 | I152I (ATT→ATC) | yhhI | transposase |
| * | NC_007779 | 4,015,569 | 0 | C→A | 100.0% | 1.2 | 1 | E157* (GAA→TAA) | yhhI | transposase |
| * | NC_007779 | 688,155 | 0 | T→G | 3.3% | 0.7 ‑67.6 0.0 | 649 | K5N (AAA→AAC) | gltI | glutamate and aspartate transporter subunit |
| * | NC_007779 | 3,746,917 | 0 | T→G | 100.0% | 0.7 | 1 | intergenic (‑515/‑62) | mdtL/insH | multidrug efflux system protein/IS5 element protein |
| * | NC_007779 | 2,410,314 | 1 | .→C | 0.8% | 0.4 ‑0.7 ‑0.0 | 262 | intergenic (‑572/+59) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/DNA‑binding transcriptional repressor |
| * | NC_007779 | 223,989 | 0 | T→C | 100.0% | ‑0.2 | 1 | noncoding (219/1542 nt) | rrsH | 16S ribosomal RNA |
| * | NC_007779 | 730,391 | 0 | T→C | 100.0% | ‑0.2 | 1 | G129G (GGT→GGC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 730,402 | 0 | A→C | 100.0% | ‑0.2 | 1 | Y133S (TAC→TCC) | rhsC | rhsC element core protein RshC |
| * | NC_007779 | 4,513,002 | 0 | C→A | 100.0% | ‑0.2 | 1 | R99L (CGG→CTG) | insI | IS30 transposase |
| * | NC_007779 | 227,997 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2239/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 227,998 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2240/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,000 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2242/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,001 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2243/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,002 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2244/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,003 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2245/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,004 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2246/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,006 | 0 | C→A | 100.0% | ‑0.5 | 1 | noncoding (2248/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,007 | 0 | T→A | 100.0% | ‑0.5 | 1 | noncoding (2249/2904 nt) | rrlH | 23S ribosomal RNA |
| * | NC_007779 | 228,008 | 0 | G→A | 100.0% | ‑0.5 | 1 | noncoding (2250/2904 nt) | rrlH | 23S ribosomal RNA |