breseq  version 0.25c  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 13,269 A→G 8.0% E369E (GAA→GAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,271 C→T 8.0% A370V (GCT→GTT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,275 A→C 9.3% V371V (GTA→GTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,279 A→G 9.5% I373V (ATC→GTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,281 C→T 9.8% I373I (ATC→ATT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,291 G→C 11.7% V377L (GTT→CTT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,293 T→G 10.8% V377V (GTT→GTG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,298 G→C 11.2% G379A (GGT→GCT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,299 T→C 11.2% G379G (GGT→GGC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,302 T→C 11.1% G380G (GGT→GGC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,309 A→C 10.5% T383P (ACT→CCT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,310 C→G 10.7% T383S (ACT→AGT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,311 T→C 10.6% T383T (ACT→ACC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,317 C→G 10.9% D385E (GAC→GAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,320 A→C 11.1% V386V (GTA→GTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,323 A→G 11.1% K387K (AAA→AAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,329 A→G 12.3% V389V (GTA→GTG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,338 G→C 13.8% L392L (CTG→CTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,356 T→G 10.9% S398S (TCT→TCG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,365 C→T 8.6% I401I (ATC→ATT)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,368 A→G 8.1% E402E (GAA→GAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,373 T→A 7.5% M404K (ATG→AAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,383 G→C 5.9% V407V (GTG→GTC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,389 G→C 6.0% T409T (ACG→ACC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,391 C→A 6.0% T410K (ACG→AAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,400 C→A 6.1% A413E (GCG→GAG)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,402 A→C 6.1% K414Q (AAA→CAA)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,403 A→G 6.1% K414R (AAA→AGA)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 13,404 A→C 6.1% K414N (AAA→AAC)  dnaK → chaperone Hsp70, co‑chaperone with DnaJ
RA 30,930 T→C 2.6% R38R (CGT→CGC)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,939 T→C 2.6% G41G (GGT→GGC)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,940 T→C 2.6% Y42H (TAC→CAC)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,941 A→T 2.5% Y42F (TAC→TTC)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,942 C→G 2.6% Y42* (TAC→TAG)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,945 C→A 2.7% R43R (CGC→CGA)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,950 T→C 2.6% I45T (ATT→ACT)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,951 T→G 3.1% I45M (ATT→ATG)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,957 G→T 2.7% V47V (GTG→GTT)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,963 C→T 2.9% S49S (TCC→TCT)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,975 C→G 2.8% T53T (ACC→ACG)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,978 C→T 2.5% I54I (ATC→ATT)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,984 C→T 2.8% T56T (ACC→ACT)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,993 A→G 2.6% E59E (GAA→GAG)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,994 A→T 2.4% M60L (ATG→TTG)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,996 G→C 2.6% M60I (ATG→ATC)  carB → carbamoyl‑phosphate synthase large subunit
RA 30,999 T→A 2.7% A61A (GCT→GCA)  carB → carbamoyl‑phosphate synthase large subunit
RA 31,002 T→C 2.6% D62D (GAT→GAC)  carB → carbamoyl‑phosphate synthase large subunit
RA 31,003 G→T 2.6% A63S (GCA→TCA)  carB → carbamoyl‑phosphate synthase large subunit
RA 31,005 A→C 2.7% A63A (GCA→GCC)  carB → carbamoyl‑phosphate synthase large subunit
RA 66,457 C→A 100% V32F (GTT→TTT)  araD ← L‑ribulose‑5‑phosphate 4‑epimerase
RA 80,397 T→C 5.3% Q156Q (CAA→CAG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,403 T→A 5.1% A154A (GCA→GCT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,409 T→A 8.8% V152V (GTA→GTT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,415 T→C 10.7% E150E (GAA→GAG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,430 G→A 10.5% G145G (GGC→GGT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,447 G→T 10.9% L140M (CTG→ATG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,448 T→C 11.3% A139A (GCA→GCG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,454 A→G 11.1% F137F (TTT→TTC)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,457 C→A 11.2% A136A (GCG→GCT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,460 G→A 11.4% G135G (GGC→GGT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,466 G→C 11.8% T133T (ACC→ACG)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,469 G→T 11.8% A132A (GCC→GCA)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,472 G→A 11.0% T131T (ACC→ACT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,484 G→A 9.0% G127G (GGC→GGT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,487 G→A 9.0% C126C (TGC→TGT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 80,495 T→C 6.0% I124V (ATT→GTT)  leuC ← 3‑isopropylmalate isomerase subunit, dehydratase component
RA 97,880 C→T 100% S265F (TCC→TTC)  murD → UDP‑N‑acetylmuramoyl‑L‑alanine:D‑glutamate ligase
RA 109,400 G→C 3.5% S374S (TCG→TCC)  secA → preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon
RA 167,632 C→A 100% P50Q (CCG→CAG)  fhuA → ferrichrome outer membrane transporter
RA 190,413 T→C 6.5% G180G (GGT→GGC)  rpsB → 30S ribosomal protein S2
RA 190,423 T→G 7.1% F184V (TTT→GTT)  rpsB → 30S ribosomal protein S2
RA 190,428 T→C 7.1% A185A (GCT→GCC)  rpsB → 30S ribosomal protein S2
RA 190,432 G→C 6.6% V187L (GTT→CTT)  rpsB → 30S ribosomal protein S2
RA 190,434 T→G 6.9% V187V (GTT→GTG)  rpsB → 30S ribosomal protein S2
RA 190,437 T→C 6.6% D188D (GAT→GAC)  rpsB → 30S ribosomal protein S2
RA 190,445 C→G 6.9% S191C (TCT→TGT)  rpsB → 30S ribosomal protein S2
RA 190,446 T→C 7.2% S191S (TCT→TCC)  rpsB → 30S ribosomal protein S2
RA 190,449 T→C 6.6% D192D (GAT→GAC)  rpsB → 30S ribosomal protein S2
RA 190,455 C→T 6.6% D194D (GAC→GAT)  rpsB → 30S ribosomal protein S2
RA 190,457 G→A 6.8% G195D (GGT→GAT)  rpsB → 30S ribosomal protein S2
RA 190,458 T→C 6.8% G195G (GGT→GGC)  rpsB → 30S ribosomal protein S2
RA 190,464 C→T 6.9% D197D (GAC→GAT)  rpsB → 30S ribosomal protein S2
RA 190,468 G→C 6.3% V199L (GTT→CTT)  rpsB → 30S ribosomal protein S2
RA 190,469 T→C 6.5% V199A (GTT→GCT)  rpsB → 30S ribosomal protein S2
RA 190,470 T→G 6.5% V199V (GTT→GTG)  rpsB → 30S ribosomal protein S2
RA 190,479 T→C 6.5% G202G (GGT→GGC)  rpsB → 30S ribosomal protein S2
RA 190,497 T→C 5.9% R208R (CGT→CGC)  rpsB → 30S ribosomal protein S2
RA 224,686 T→G 52.5% noncoding (916/1542 nt) rrsH → 16S ribosomal RNA
RA 224,713 T→C 26.0% noncoding (943/1542 nt) rrsH → 16S ribosomal RNA
RA 224,725 T→A 21.4% noncoding (955/1542 nt) rrsH → 16S ribosomal RNA
RA 224,759 T→G 15.3% noncoding (989/1542 nt) rrsH → 16S ribosomal RNA
RA 224,768 C→A 14.1% noncoding (998/1542 nt) rrsH → 16S ribosomal RNA
RA 224,769 C→T 14.3% noncoding (999/1542 nt) rrsH → 16S ribosomal RNA
RA 224,892 T→A 24.4% noncoding (1122/1542 nt) rrsH → 16S ribosomal RNA
RA 224,902 +A 24.5% noncoding (1132/1542 nt) rrsH → 16S ribosomal RNA
RA 224,903 G→C 25.0% noncoding (1133/1542 nt) rrsH → 16S ribosomal RNA
RA 224,906 C→T 27.2% noncoding (1136/1542 nt) rrsH → 16S ribosomal RNA
RA 224,907 C→G 26.9% noncoding (1137/1542 nt) rrsH → 16S ribosomal RNA
RA 224,908 G→T 26.8% noncoding (1138/1542 nt) rrsH → 16S ribosomal RNA
RA 224,910 C→G 27.0% noncoding (1140/1542 nt) rrsH → 16S ribosomal RNA
RA 224,911 C→T 26.8% noncoding (1141/1542 nt) rrsH → 16S ribosomal RNA
RA 224,915 A→G 27.2% noncoding (1145/1542 nt) rrsH → 16S ribosomal RNA
RA 224,920 A→G 29.2% noncoding (1150/1542 nt) rrsH → 16S ribosomal RNA
RA 224,921 A→T 28.9% noncoding (1151/1542 nt) rrsH → 16S ribosomal RNA
RA 224,923 G→A 30.1% noncoding (1153/1542 nt) rrsH → 16S ribosomal RNA
RA 224,937 A→T 28.6% noncoding (1167/1542 nt) rrsH → 16S ribosomal RNA
RA 224,968 G→A 35.0% noncoding (1198/1542 nt) rrsH → 16S ribosomal RNA
RA 274,547 A→G 100% intergenic (‑206/‑2) insH ← / → mmuP IS5 transposase and trans‑activator/S‑methylmethionine transporter
MC JC 274,733 Δ97,240 bp 100% [mmuP]–[mhpD] 90 genes
RA 547,694 A→G 100% intergenic (+123/‑1156) fdrA → / → ylbF acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein
RA 547,831 +G 100% intergenic (+260/‑1019) fdrA → / → ylbF acyl‑CoA synthetase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein
RA 556,858 A→T 100% L36Q (CTG→CAG)  folD ← bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/5,10‑methylene‑tetrahydrofolate cyclohydrolase
RA 569,996 G→C 100% intergenic (+345/‑120) ybcK → / → ybcL recombinase/kinase inhibitor
MC JC 654,214 Δ1,199 bp 100% insH insH
RA 725,818 A→G 8.0% N547N (AAT→AAC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,822 C→G 10.5% G546A (GGC→GCC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,827 C→T 12.7% E544E (GAG→GAA)  kdpB ← potassium translocating ATPase, subunit B
RA 725,830 T→C 12.8% K543K (AAA→AAG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,890 A→T 16.3% A523A (GCT→GCA)  kdpB ← potassium translocating ATPase, subunit B
RA 725,908 G→A 15.4% G517G (GGC→GGT)  kdpB ← potassium translocating ATPase, subunit B
RA 725,917 C→G 12.1% A514A (GCG→GCC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,920 T→G 9.7% V513V (GTA→GTC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,925 A→G 6.1% L512L (TTG→CTG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,926 A→G 6.1% R511R (CGT→CGC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,929 A→T 5.9% G510G (GGT→GGA)  kdpB ← potassium translocating ATPase, subunit B
RA 725,932 T→C 5.8% E509E (GAA→GAG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,934 C→T 5.9% E509K (GAA→AAA)  kdpB ← potassium translocating ATPase, subunit B
RA 725,937 C→A 6.0% A508S (GCG→TCG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,941 A→C 5.9% Y506* (TAT→TAG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,943 A→C 5.9% Y506D (TAT→GAT)  kdpB ← potassium translocating ATPase, subunit B
RA 725,946 G→T 5.7% Q505K (CAG→AAG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,947 A→G 6.1% R504R (CGT→CGC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,956 T→C 6.2% A501A (GCA→GCG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,957 G→T 5.8% A501E (GCA→GAA)  kdpB ← potassium translocating ATPase, subunit B
RA 725,959 C→T 5.8% L500L (CTG→CTA)  kdpB ← potassium translocating ATPase, subunit B
RA 725,965 G→C 4.1% A498A (GCC→GCG)  kdpB ← potassium translocating ATPase, subunit B
RA 725,966 G→T 4.1% A498D (GCC→GAC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,967 C→G 4.1% A498P (GCC→CCC)  kdpB ← potassium translocating ATPase, subunit B
RA 725,977 C→G 1.8% A494A (GCG→GCC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,501 A→C 4.9% S320A (TCG→GCG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,502 C→A 4.9% A319A (GCG→GCT)  kdpB ← potassium translocating ATPase, subunit B
RA 726,519 G→A 5.1% L314F (CTC→TTC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,535 T→C 5.4% K308K (AAA→AAG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,538 A→G 5.1% D307D (GAT→GAC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,541 C→T 5.1% L306L (CTG→CTA)  kdpB ← potassium translocating ATPase, subunit B
RA 726,544 T→C 5.1% L305L (CTA→CTG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,550 A→C 6.2% V303V (GTT→GTG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,551 A→G 6.3% V303A (GTT→GCT)  kdpB ← potassium translocating ATPase, subunit B
RA 726,552 C→T 6.3% V303I (GTT→ATT)  kdpB ← potassium translocating ATPase, subunit B
RA 726,554 T→G 6.3% D302A (GAC→GCC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,556 A→G 6.3% V301V (GTT→GTC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,565 T→A 5.7% A298A (GCA→GCT)  kdpB ← potassium translocating ATPase, subunit B
RA 726,568 C→G 5.6% A297A (GCG→GCC)  kdpB ← potassium translocating ATPase, subunit B
RA 726,571 T→C 5.4% E296E (GAA→GAG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,577 T→C 5.4% A294A (GCA→GCG)  kdpB ← potassium translocating ATPase, subunit B
RA 726,583 T→G 5.4% G292G (GGA→GGC)  kdpB ← potassium translocating ATPase, subunit B
RA 749,354 C→A 100% P17P (CCG→CCT)  ybgO ← fimbrial‑like adhesin protein
RA 758,440 C→A 100% F110L (TTC→TTA)  sdhB → succinate dehydrogenase, FeS subunit
RA 815,429 G→C 2.7% L494L (CTG→CTC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,437 T→A 5.1% F497Y (TTC→TAC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,450 A→C 9.4% V501V (GTA→GTC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,453 G→T 9.8% G502G (GGG→GGT)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,456 C→T 9.3% I503I (ATC→ATT)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,460 T→C 9.5% L505L (TTA→CTA)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,462 A→G 9.5% L505L (TTA→TTG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,471 A→G 13.1% E508E (GAA→GAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,474 T→C 13.4% G509G (GGT→GGC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,477 G→C 12.9% L510L (CTG→CTC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,480 T→C 13.0% D511D (GAT→GAC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,486 G→C 18.2% P513P (CCG→CCC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,489 A→G 18.5% E514E (GAA→GAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,504 G→A 22.8% A519A (GCG→GCA)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,522 A→G 20.7% K525K (AAA→AAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,525 A→G 20.6% E526E (GAA→GAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,528 C→G 20.6% G527G (GGC→GGG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,532 C→T 19.4% L529L (CTG→TTG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,540 C→G 18.6% S531S (TCC→TCG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,543 A→G 16.3% E532E (GAA→GAG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,555 C→T 14.5% I536I (ATC→ATT)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,561 C→G 12.7% T538T (ACC→ACG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,573 G→C 11.4% A542A (GCG→GCC)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,576 A→G 9.1% A543A (GCA→GCG)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 815,579 T→A 7.8% R544R (CGT→CGA)  uvrB → excinulease of nucleotide excision repair, DNA damage recognition component
RA 846,307 G→C 3.1% T193T (ACC→ACG)  glnQ ← glutamine transporter subunit
RA 846,315 T→C 4.5% I191V (ATC→GTC)  glnQ ← glutamine transporter subunit
RA 846,316 C→G 4.5% V190V (GTG→GTC)  glnQ ← glutamine transporter subunit
RA 846,322 C→G 5.6% T188T (ACG→ACC)  glnQ ← glutamine transporter subunit
RA 846,328 C→A 5.0% G186G (GGG→GGT)  glnQ ← glutamine transporter subunit
RA 846,331 T→C 5.4% E185E (GAA→GAG)  glnQ ← glutamine transporter subunit
RA 846,334 T→A 5.8% E184D (GAA→GAT)  glnQ ← glutamine transporter subunit
RA 846,337 A→G 5.6% A183A (GCT→GCC)  glnQ ← glutamine transporter subunit
RA 846,344 T→C 5.5% D181G (GAT→GGT)  glnQ ← glutamine transporter subunit
RA 846,346 C→A 5.6% Q180H (CAG→CAT)  glnQ ← glutamine transporter subunit
RA 846,352 A→G 5.6% V178V (GTT→GTC)  glnQ ← glutamine transporter subunit
RA 846,355 C→G 5.7% K177N (AAG→AAC)  glnQ ← glutamine transporter subunit
RA 846,358 C→G 5.7% L176L (CTG→CTC)  glnQ ← glutamine transporter subunit
RA 846,361 C→A 5.9% V175V (GTG→GTT)  glnQ ← glutamine transporter subunit
RA 846,364 T→C 6.0% E174E (GAA→GAG)  glnQ ← glutamine transporter subunit
RA 846,368 T→C 6.0% H173R (CAT→CGT)  glnQ ← glutamine transporter subunit
RA 846,369 G→C 5.2% H173D (CAT→GAT)  glnQ ← glutamine transporter subunit
RA 846,371 C→A 5.3% R172L (CGC→CTC)  glnQ ← glutamine transporter subunit
RA 846,373 C→G 5.3% L171L (CTG→CTC)  glnQ ← glutamine transporter subunit
RA 846,376 T→C 5.8% E170E (GAA→GAG)  glnQ ← glutamine transporter subunit
RA 846,400 T→C 11.7% E162E (GAA→GAG)  glnQ ← glutamine transporter subunit
RA 846,406 A→G 9.1% F160F (TTT→TTC)  glnQ ← glutamine transporter subunit
RA 846,409 C→G 8.2% L159L (CTG→CTC)  glnQ ← glutamine transporter subunit
RA 846,415 C→T 7.9% M157I (ATG→ATA)  glnQ ← glutamine transporter subunit
RA 846,417 T→G 8.1% M157L (ATG→CTG)  glnQ ← glutamine transporter subunit
RA 846,418 T→C 7.6% K156K (AAA→AAG)  glnQ ← glutamine transporter subunit
RA 846,424 C→T 7.3% K154K (AAG→AAA)  glnQ ← glutamine transporter subunit
RA 846,426 T→C 7.7% K154E (AAG→GAG)  glnQ ← glutamine transporter subunit
RA 846,429 C→T 7.4% V153M (GTG→ATG)  glnQ ← glutamine transporter subunit
RA 846,430 C→G 7.7% A152A (GCG→GCC)  glnQ ← glutamine transporter subunit
RA 846,436 C→T 8.0% A150A (GCG→GCA)  glnQ ← glutamine transporter subunit
RA 846,439 G→A 8.0% R149R (CGC→CGT)  glnQ ← glutamine transporter subunit
RA 846,442 G→A 7.7% A148A (GCC→GCT)  glnQ ← glutamine transporter subunit
RA 846,448 C→G 7.7% A146A (GCG→GCC)  glnQ ← glutamine transporter subunit
RA 846,451 C→A 7.8% V145V (GTG→GTT)  glnQ ← glutamine transporter subunit
RA 846,454 A→T 7.6% R144R (CGT→CGA)  glnQ ← glutamine transporter subunit
RA 846,463 T→C 7.1% Q141Q (CAA→CAG)  glnQ ← glutamine transporter subunit
RA 846,466 A→G 3.7% G140G (GGT→GGC)  glnQ ← glutamine transporter subunit
RA 846,469 A→G 3.9% G139G (GGT→GGC)  glnQ ← glutamine transporter subunit
RA 846,472 A→C 3.8% S138S (TCT→TCG)  glnQ ← glutamine transporter subunit
RA 887,234 C→A 100% A176A (GCG→GCT)  ybjJ ← transporter
RA 987,574 G→T 100% intergenic (‑170/+433) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 1,093,686 T→C 100% V130A (GTA→GCA)  ycdT → diguanylate cyclase
RA 1,097,580 C→T 22.4% intergenic (+329/+226) ycdU → / ← serX inner membrane protein/tRNA‑Ser
RA 1,170,573 C→T 100% intergenic (‑164/‑77) ycfQ ← / → ycfR DNA‑binding transcriptional regulator/hypothetical protein
RA 1,197,797 C→T 4.3% H366H (CAC→CAT)  icd → isocitrate dehydrogenase,‑specific for NADP+
RA 1,197,809 C→T 3.4% T370T (ACC→ACT)  icd → isocitrate dehydrogenase,‑specific for NADP+
RA 1,197,822 T→C 3.3% L375L (TTA→CTA)  icd → isocitrate dehydrogenase,‑specific for NADP+
RA 1,197,824 A→G 3.3% L375L (TTA→TTG)  icd → isocitrate dehydrogenase,‑specific for NADP+
RA 1,213,001 T→C 2.8% intergenic (+245/+256) mcrA → / ← elbA 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein
RA 1,213,013 T→C 2.8% intergenic (+257/+244) mcrA → / ← elbA 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein
RA 1,213,026 C→T 2.8% intergenic (+270/+231) mcrA → / ← elbA 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein
RA 1,213,028 G→A 2.8% intergenic (+272/+229) mcrA → / ← elbA 5‑methylcytosine‑specific restriction endonuclease B/hypothetical protein
RA 1,282,104 T→G 2.9% C222G (TGC→GGC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,105 G→C 2.9% C222S (TGC→TCC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,110 T→C 2.9% L224L (TTG→CTG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,115 T→A 3.1% P225P (CCT→CCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,118 T→G 2.9% P226P (CCT→CCG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,121 G→A 2.8% A227A (GCG→GCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,124 T→A 2.9% S228S (TCT→TCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,127 G→A 3.3% P229P (CCG→CCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,130 A→G 2.8% Q230Q (CAA→CAG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,135 G→T 3.0% W232L (TGG→TTG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,136 G→C 3.0% W232C (TGG→TGC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,142 G→C 3.0% E234D (GAG→GAC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,145 A→G 3.0% Q235Q (CAA→CAG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,148 T→C 3.0% T236T (ACT→ACC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,154 A→T 2.8% V238V (GTA→GTT)  narG → nitrate reductase 1 subunit alpha
RA 1,282,157 G→A 3.0% P239P (CCG→CCA)  narG → nitrate reductase 1 subunit alpha
RA 1,282,160 A→G 3.0% E240E (GAA→GAG)  narG → nitrate reductase 1 subunit alpha
RA 1,282,163 T→C 3.2% S241S (TCT→TCC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,165 C→G 3.2% A242G (GCT→GGT)  narG → nitrate reductase 1 subunit alpha
RA 1,282,174 A→T 2.9% Y245F (TAC→TTC)  narG → nitrate reductase 1 subunit alpha
RA 1,282,178 C→T 2.9% N246N (AAC→AAT)  narG → nitrate reductase 1 subunit alpha
RA 1,288,364 G→A 100% A27T (GCG→ACG)  ychS → hypothetical protein
RA 1,288,370 A→G 100% K29E (AAG→GAG)  ychS → hypothetical protein
RA 1,288,462 T→C 100% S59S (AGT→AGC)  ychS → hypothetical protein
MC JC 1,301,041 Δ1,336 bp 100% insC–insD insC, insD
RA 1,318,876 G→A 100% P21S (CCT→TCT)  trpA ← tryptophan synthase subunit alpha
RA 1,333,301 G→A 3.0% S180S (TCG→TCA)  topA → DNA topoisomerase I, omega subunit
RA 1,333,305 C→G 3.1% L182V (CTG→GTG)  topA → DNA topoisomerase I, omega subunit
RA 1,333,310 A→G 2.6% L183L (CTA→CTG)  topA → DNA topoisomerase I, omega subunit
RA 1,333,316 A→G 2.7% K185K (AAA→AAG)  topA → DNA topoisomerase I, omega subunit
RA 1,333,320 A→G 2.7% I187V (ATC→GTC)  topA → DNA topoisomerase I, omega subunit
RA 1,333,323 G→A 2.7% A188T (GCT→ACT)  topA → DNA topoisomerase I, omega subunit
RA 1,333,324 C→T 2.7% A188V (GCT→GTT)  topA → DNA topoisomerase I, omega subunit
RA 1,333,325 T→G 2.8% A188A (GCT→GCG)  topA → DNA topoisomerase I, omega subunit
RA 1,333,327 G→C 2.6% R189P (CGT→CCT)  topA → DNA topoisomerase I, omega subunit
RA 1,333,329 G→C 2.4% G190R (GGC→CGC)  topA → DNA topoisomerase I, omega subunit
RA 1,333,337 T→G 2.4% S192S (TCT→TCG)  topA → DNA topoisomerase I, omega subunit
RA 1,333,340 C→A 2.4% A193A (GCC→GCA)  topA → DNA topoisomerase I, omega subunit
RA 1,333,343 T→C 2.3% G194G (GGT→GGC)  topA → DNA topoisomerase I, omega subunit
MC JC 1,413,639 Δ23,060 bp 100% [ydaO]–ynaE 30 genes
RA 1,483,588 G→A 100% L322L (CTG→CTA)  ynbD → phosphatase, inner membrane protein
RA 1,485,314 G→C 10.4% A161A (GCG→GCC)  hrpA → ATP‑dependent helicase
RA 1,485,320 C→T 10.3% I163I (ATC→ATT)  hrpA → ATP‑dependent helicase
RA 1,485,321 C→G 10.3% Q164E (CAG→GAG)  hrpA → ATP‑dependent helicase
RA 1,485,322 A→G 10.2% Q164R (CAG→CGG)  hrpA → ATP‑dependent helicase
RA 1,485,323 G→C 10.3% Q164H (CAG→CAC)  hrpA → ATP‑dependent helicase
RA 1,485,325 A→G 10.3% Q165R (CAA→CGA)  hrpA → ATP‑dependent helicase
RA 1,485,326 A→C 10.3% Q165H (CAA→CAC)  hrpA → ATP‑dependent helicase
RA 1,485,332 C→A 10.3% R167R (CGC→CGA)  hrpA → ATP‑dependent helicase
RA 1,485,336 C→T 10.9% L169L (CTG→TTG)  hrpA → ATP‑dependent helicase
RA 1,485,339 A→C 8.9% M170L (ATG→CTG)  hrpA → ATP‑dependent helicase
RA 1,485,340 T→G 8.4% M170R (ATG→AGG)  hrpA → ATP‑dependent helicase
RA 1,485,341 G→T 8.5% M170I (ATG→ATT)  hrpA → ATP‑dependent helicase
RA 1,485,342 C→G 8.7% Q171E (CAG→GAG)  hrpA → ATP‑dependent helicase
RA 1,485,353 T→C 12.4% T174T (ACT→ACC)  hrpA → ATP‑dependent helicase
RA 1,485,359 T→C 13.0% I176I (ATT→ATC)  hrpA → ATP‑dependent helicase
RA 1,485,362 T→C 13.0% I177I (ATT→ATC)  hrpA → ATP‑dependent helicase
RA 1,485,365 C→T 12.7% D178D (GAC→GAT)  hrpA → ATP‑dependent helicase
RA 1,485,368 A→G 13.1% E179E (GAA→GAG)  hrpA → ATP‑dependent helicase
RA 1,485,386 G→C 11.9% L185L (CTG→CTC)  hrpA → ATP‑dependent helicase
RA 1,485,389 T→C 9.7% N186N (AAT→AAC)  hrpA → ATP‑dependent helicase
RA 1,485,395 T→C 7.9% D188D (GAT→GAC)  hrpA → ATP‑dependent helicase
RA 1,485,398 T→C 7.9% F189F (TTT→TTC)  hrpA → ATP‑dependent helicase
RA 1,485,399 T→C 7.8% L190L (TTG→CTG)  hrpA → ATP‑dependent helicase
RA 1,485,404 C→G 7.7% L191L (CTC→CTG)  hrpA → ATP‑dependent helicase
RA 1,485,407 C→A 8.3% G192G (GGC→GGA)  hrpA → ATP‑dependent helicase
RA 1,485,413 G→A 7.7% L194L (TTG→TTA)  hrpA → ATP‑dependent helicase
RA 1,485,416 A→G 8.0% K195K (AAA→AAG)  hrpA → ATP‑dependent helicase
RA 1,485,417 G→C 7.8% E196Q (GAG→CAG)  hrpA → ATP‑dependent helicase
RA 1,485,419 G→T 8.7% E196D (GAG→GAT)  hrpA → ATP‑dependent helicase
RA 1,485,420 T→A 8.6% L197M (TTG→ATG)  hrpA → ATP‑dependent helicase
RA 1,485,422 G→T 9.1% L197F (TTG→TTT)  hrpA → ATP‑dependent helicase
RA 1,485,430 G→A 8.2% R200Q (CGG→CAG)  hrpA → ATP‑dependent helicase
RA 1,485,434 T→C 7.7% R201R (CGT→CGC)  hrpA → ATP‑dependent helicase
RA 1,485,437 T→A 7.3% P202P (CCT→CCA)  hrpA → ATP‑dependent helicase
RA 1,485,440 C→T 6.6% D203D (GAC→GAT)  hrpA → ATP‑dependent helicase
RA 1,485,443 A→G 6.6% L204L (CTA→CTG)  hrpA → ATP‑dependent helicase
RA 1,485,446 A→G 6.6% K205K (AAA→AAG)  hrpA → ATP‑dependent helicase
RA 1,485,461 C→G 4.7% S210S (TCC→TCG)  hrpA → ATP‑dependent helicase
RA 1,485,467 T→G 1.8% T212T (ACT→ACG)  hrpA → ATP‑dependent helicase
RA 1,486,010 T→C 2.8% Y393Y (TAT→TAC)  hrpA → ATP‑dependent helicase
RA 1,486,011 T→A 2.8% S394T (TCC→ACC)  hrpA → ATP‑dependent helicase
RA 1,486,012 C→G 2.8% S394C (TCC→TGC)  hrpA → ATP‑dependent helicase
RA 1,486,016 A→G 2.8% E395E (GAA→GAG)  hrpA → ATP‑dependent helicase
RA 1,486,019 C→G 2.8% D396E (GAC→GAG)  hrpA → ATP‑dependent helicase
RA 1,486,022 T→A 2.7% D397E (GAT→GAA)  hrpA → ATP‑dependent helicase
RA 1,486,025 C→T 2.7% F398F (TTC→TTT)  hrpA → ATP‑dependent helicase
RA 1,486,031 G→T 2.7% S400S (TCG→TCT)  hrpA → ATP‑dependent helicase
RA 1,486,037 G→C 3.2% P402P (CCG→CCC)  hrpA → ATP‑dependent helicase
RA 1,486,046 C→G 5.5% T405T (ACC→ACG)  hrpA → ATP‑dependent helicase
RA 1,486,064 T→C 5.5% R411R (CGT→CGC)  hrpA → ATP‑dependent helicase
RA 1,486,070 C→T 5.1% N413N (AAC→AAT)  hrpA → ATP‑dependent helicase
RA 1,486,073 G→C 5.1% L414L (CTG→CTC)  hrpA → ATP‑dependent helicase
RA 1,486,076 C→T 4.9% A415A (GCC→GCT)  hrpA → ATP‑dependent helicase
RA 1,486,083 A→G 4.7% I418V (ATT→GTT)  hrpA → ATP‑dependent helicase
RA 1,486,085 T→A 4.8% I418I (ATT→ATA)  hrpA → ATP‑dependent helicase
RA 1,486,086 T→C 4.9% L419L (TTG→CTG)  hrpA → ATP‑dependent helicase
RA 1,496,775 Δ1 bp 100% coding (11/924 nt) ydcI ← DNA‑binding transcriptional regulator
RA 1,539,932 A→G 7.6% D212D (GAT→GAC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,935 A→G 7.5% I211I (ATT→ATC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,937 T→C 7.6% I211V (ATT→GTT)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,957 T→G 9.1% E204A (GAA→GCA)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,958 C→T 9.3% E204K (GAA→AAA)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,968 G→C 6.9% I200M (ATC→ATG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,971 A→C 6.4% A199A (GCT→GCG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,978 C→G 4.2% S197T (AGC→ACC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,979 T→A 3.9% S197C (AGC→TGC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,988 T→A 3.8% T194S (ACC→TCC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,989 C→A 3.8% A193A (GCG→GCT)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,991 C→A 3.2% A193S (GCG→TCG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,995 G→A 3.7% C191C (TGC→TGT)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,539,999 C→G 3.7% S190T (AGC→ACC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,001 G→C 3.7% P189P (CCC→CCG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,004 A→G 3.7% N188N (AAT→AAC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,007 G→C 3.7% L187L (CTC→CTG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,009 G→A 3.7% L187F (CTC→TTC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,016 T→C 3.9% E184E (GAA→GAG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,019 G→A 3.7% C183C (TGC→TGT)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,022 C→G 2.2% L182L (CTG→CTC)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,024 G→T 2.2% L182M (CTG→ATG)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,540,028 C→A 2.3% P180P (CCG→CCT)  narY ← nitrate reductase 2 (NRZ) subunit beta
RA 1,615,814 C→A 100% D202Y (GAC→TAC)  yneI ← aldehyde dehydrogenase
RA 1,669,599 Δ1 bp 100% coding (680/1221 nt) dgsA ← DNA‑binding transcriptional repressor
RA 1,844,073 G→A 100% intergenic (‑224/‑12) ynjH ← / → gdhA hypothetical protein/glutamate dehydrogenase, NADP‑specific
RA 1,864,922 C→G 2.9% S146S (TCC→TCG)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,931 C→T 6.8% S149S (TCC→TCT)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,956 C→A 7.0% L158M (CTG→ATG)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,964 A→G 7.1% K160K (AAA→AAG)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,968 A→C 7.2% I162L (ATC→CTC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,970 C→G 6.9% I162M (ATC→ATG)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,971 A→G 7.0% N163D (AAC→GAC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,976 T→C 6.9% D164D (GAT→GAC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,979 C→G 7.0% N165K (AAC→AAG)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,988 +G 7.6% coding (504/996 nt) gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,990 T→G 7.6% I169S (ATC→AGC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,993 Δ1 bp 7.3% coding (509/996 nt) gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,864,994 A→C 7.3% E170D (GAA→GAC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,865,000 G→C 8.3% L172L (CTG→CTC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,865,010 G→A 5.2% V176I (GTT→ATT)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,865,012 T→C 5.4% V176V (GTT→GTC)  gapA → glyceraldehyde‑3‑phosphate dehydrogenase A
RA 1,918,872 T→A 100% S301T (TCC→ACC)  yebS → inner membrane protein
RA 1,973,476 G→A 100% L310L (CTC→CTT)  tar ← methyl‑accepting chemotaxis protein II
RA 2,005,401 C→T 100% E115K (GAA→AAA)  fliC ← flagellar filament structural protein
RA 2,170,094 C→A 100% intergenic (‑437/+32) ogrK ← / ← yegR DNA‑binding transcriptional regulator/hypothetical protein
RA 2,178,210 A→C 5.0% intergenic (+179/+183) insH → / ← gatZ IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit
RA 2,251,498 C→A 6.1% W123C (TGG→TGT)  lysP ← lysine transporter
RA 2,251,499 C→T 6.1% W123* (TGG→TAG)  lysP ← lysine transporter
RA 2,251,503 T→G 6.3% S122R (AGC→CGC)  lysP ← lysine transporter
RA 2,251,507 G→C 6.9% V120V (GTC→GTG)  lysP ← lysine transporter
RA 2,251,514 T→G 7.8% Q118P (CAG→CCG)  lysP ← lysine transporter
RA 2,251,515 G→C 7.9% Q118E (CAG→GAG)  lysP ← lysine transporter
RA 2,251,519 T→A 7.8% A116A (GCA→GCT)  lysP ← lysine transporter
RA 2,251,522 A→G 7.0% V115V (GTT→GTC)  lysP ← lysine transporter
RA 2,251,525 C→G 7.1% L114L (CTG→CTC)  lysP ← lysine transporter
RA 2,251,528 G→C 7.1% D113E (GAC→GAG)  lysP ← lysine transporter
RA 2,251,531 A→T 7.1% V112V (GTT→GTA)  lysP ← lysine transporter
RA 2,251,532 A→G 6.9% V112A (GTT→GCT)  lysP ← lysine transporter
RA 2,251,537 G→C 6.9% I110M (ATC→ATG)  lysP ← lysine transporter
RA 2,251,539 T→C 6.8% I110V (ATC→GTC)  lysP ← lysine transporter
RA 2,251,543 C→A 6.8% V108V (GTG→GTT)  lysP ← lysine transporter
RA 2,251,545 C→T 6.8% V108M (GTG→ATG)  lysP ← lysine transporter
RA 2,251,555 G→A 6.8% Y104Y (TAC→TAT)  lysP ← lysine transporter
RA 2,251,556 T→A 6.8% Y104F (TAC→TTC)  lysP ← lysine transporter
RA 2,251,575 G→T 8.1% L98M (CTG→ATG)  lysP ← lysine transporter
RA 2,251,579 G→A 7.2% F96F (TTC→TTT)  lysP ← lysine transporter
RA 2,251,585 A→G 5.3% F94F (TTT→TTC)  lysP ← lysine transporter
MC JC 2,320,795 Δ1,336 bp 100% insD–insC insD, insC
RA 2,406,075 C→T 100% V51I (GTT→ATT)  nuoF ← NADH:ubiquinone oxidoreductase, chain F
RA 2,416,102 G→A 100% L233L (CTG→TTG)  yfbS ← transporter
RA 2,538,628 C→T 100% T258T (ACC→ACT)  cysK → cysteine synthase A, O‑acetylserine sulfhydrolase A subunit
RA 2,705,435 A→G 4.5% C116R (TGC→CGC)  lepA ← GTP binding membrane protein
RA 2,731,753 C→G 4.3% L359F (TTG→TTC)  clpB ← protein disaggregation chaperone
RA 2,731,755 A→C 4.3% L359V (TTG→GTG)  clpB ← protein disaggregation chaperone
RA 2,731,756 T→C 4.3% E358E (GAA→GAG)  clpB ← protein disaggregation chaperone
RA 2,731,762 A→G 10.0% R356R (CGT→CGC)  clpB ← protein disaggregation chaperone
RA 2,731,768 T→C 13.9% K354K (AAA→AAG)  clpB ← protein disaggregation chaperone
RA 2,731,786 C→G 14.7% A348A (GCG→GCC)  clpB ← protein disaggregation chaperone
RA 2,731,794 T→C 14.3% T346A (ACC→GCC)  clpB ← protein disaggregation chaperone
RA 2,731,795 A→G 14.1% D345D (GAT→GAC)  clpB ← protein disaggregation chaperone
RA 2,731,798 T→C 14.3% E344E (GAA→GAG)  clpB ← protein disaggregation chaperone
RA 2,731,804 A→G 14.1% S342S (TCT→TCC)  clpB ← protein disaggregation chaperone
RA 2,731,805 G→C 14.3% S342C (TCT→TGT)  clpB ← protein disaggregation chaperone
RA 2,731,806 A→T 14.4% S342T (TCT→ACT)  clpB ← protein disaggregation chaperone
RA 2,731,807 A→C 14.4% P341P (CCT→CCG)  clpB ← protein disaggregation chaperone
RA 2,731,813 G→A 15.2% A339A (GCC→GCT)  clpB ← protein disaggregation chaperone
RA 2,731,814 G→C 15.2% A339G (GCC→GGC)  clpB ← protein disaggregation chaperone
RA 2,731,816 A→G 16.3% V338V (GTT→GTC)  clpB ← protein disaggregation chaperone
RA 2,731,822 C→G 15.9% V336V (GTG→GTC)  clpB ← protein disaggregation chaperone
RA 2,731,825 T→C 14.6% K335K (AAA→AAG)  clpB ← protein disaggregation chaperone
RA 2,731,827 T→G 14.6% K335Q (AAA→CAA)  clpB ← protein disaggregation chaperone
RA 2,731,840 T→C 14.2% E330E (GAA→GAG)  clpB ← protein disaggregation chaperone
RA 2,731,855 T→C 6.2% K325K (AAA→AAG)  clpB ← protein disaggregation chaperone
RA 2,731,858 T→C 6.2% E324E (GAA→GAG)  clpB ← protein disaggregation chaperone
RA 2,731,861 A→G 3.0% I323I (ATT→ATC)  clpB ← protein disaggregation chaperone
RA 2,739,249 A→G 4.0% F186F (TTT→TTC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,252 A→G 4.4% G185G (GGT→GGC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,255 A→G 4.3% V184V (GTT→GTC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,257 C→T 4.3% V184I (GTT→ATT)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,258 C→G 4.3% P183P (CCG→CCC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,270 C→T 4.2% G179G (GGG→GGA)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,276 G→A 4.2% A177A (GCC→GCT)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,279 C→G 4.1% M176I (ATG→ATC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,281 T→G 4.1% M176L (ATG→CTG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,282 T→C 4.1% E175E (GAA→GAG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,284 C→G 4.1% E175Q (GAA→CAA)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,285 A→G 4.0% R174R (CGT→CGC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,292 G→A 4.2% T172I (ACT→ATT)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,293 T→C 4.7% T172A (ACT→GCT)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,294 T→C 4.3% Q171Q (CAA→CAG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,300 T→C 4.2% E169E (GAA→GAG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,306 T→G 4.4% T167T (ACA→ACC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,309 A→G 4.3% R166R (CGT→CGC)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,312 A→C 4.4% A165A (GCT→GCG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,739,321 T→C 2.9% A162A (GCA→GCG)  aroF ← 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible
RA 2,801,044 C→G 2.8% A347A (GCC→GCG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,048 G→C 2.8% D349H (GAT→CAT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,050 T→G 2.8% D349E (GAT→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,060 C→A 2.8% R353R (CGA→AGA)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,061 G→C 2.8% R353P (CGA→CCA)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,062 A→C 2.8% R353R (CGA→CGC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,063 C→A 2.7% L354M (CTG→ATG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,065 G→C 2.8% L354L (CTG→CTC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,068 A→T 2.8% A355A (GCA→GCT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,071 A→G 2.7% E356E (GAA→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,074 C→T 2.7% I357I (ATC→ATT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,095 C→G 6.5% P364P (CCC→CCG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,107 T→C 6.8% Y368Y (TAT→TAC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,110 A→G 6.4% E369E (GAA→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,119 A→T 6.6% V372V (GTA→GTT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,125 T→C 6.6% R374R (CGT→CGC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,128 T→G 6.5% A375A (GCT→GCG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,134 T→G 4.6% P377P (CCT→CCG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,137 C→T 3.8% I378I (ATC→ATT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,139 C→A 3.8% A379D (GCC→GAC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,140 C→G 3.8% A379A (GCC→GCG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,143 G→C 4.0% G380G (GGG→GGC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,149 A→T 3.8% I382I (ATA→ATT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,152 T→C 3.9% N383N (AAT→AAC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,156 A→T 3.8% S385C (AGT→TGT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,157 G→C 3.9% S385T (AGT→ACT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,158 T→G 3.9% S385R (AGT→AGG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,801,161 T→C 4.1% N386N (AAT→AAC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,052 C→A 7.4% A683A (GCC→GCA)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,067 C→T 7.0% I688I (ATC→ATT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,070 A→G 7.2% K689K (AAA→AAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,073 G→T 6.9% T690T (ACG→ACT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,076 C→G 7.2% L691L (CTC→CTG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,079 T→C 7.1% Y692Y (TAT→TAC)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,098 A→G 7.0% M699V (ATG→GTG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,100 G→T 7.2% M699I (ATG→ATT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,109 A→G 7.3% E702E (GAA→GAG)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,112 C→T 6.7% G703G (GGC→GGT)  nrdE → ribonucleoside‑diphosphate reductase 2 subunit alpha
RA 2,802,195 A→C 7.9% K13T (AAG→ACG)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,200 T→C 7.8% S15P (TCT→CCT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,205 C→T 7.6% D16D (GAC→GAT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,208 T→C 7.5% D17D (GAT→GAC)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,211 A→G 7.7% K18K (AAA→AAG)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,217 G→C 7.4% L20L (CTG→CTC)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,227 A→G 7.3% N24D (AAT→GAT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,232 C→T 7.4% R25R (CGC→CGT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,239 A→G 7.1% S28G (AGC→GGC)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,241 C→T 7.0% S28S (AGC→AGT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,244 T→C 7.0% N29N (AAT→AAC)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,251 C→T 7.1% L32L (CTA→TTA)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,253 A→G 7.1% L32L (CTA→CTG)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,256 A→G 6.6% P33P (CCA→CCG)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
RA 2,802,277 C→T 5.3% N40N (AAC→AAT)  nrdF → ribonucleoside‑diphosphate reductase 2 subunit beta, ferritin‑like
JC 2,865,274 +46 bp 70.6% coding (817/876 nt) rpoS ← RNA polymerase, sigma S (sigma 38) factor
JC 2,865,278 +92 bp 49.3% coding (813/876 nt) rpoS ← RNA polymerase, sigma S (sigma 38) factor
RA 2,866,111 A→G 100% intergenic (‑21/+159) rpoS ← / ← nlpD RNA polymerase, sigma S (sigma 38) factor/outer membrane lipoprotein
RA 2,905,383 T→C 1.8% K405K (AAA→AAG)  eno ← enolase
RA 2,905,395 G→C 1.8% D401E (GAC→GAG)  eno ← enolase
RA 2,905,398 A→G 1.8% S400S (TCT→TCC)  eno ← enolase
RA 2,905,401 A→G 1.8% R399R (CGT→CGC)  eno ← enolase
RA 2,905,405 C→G 1.9% S398T (AGC→ACC)  eno ← enolase
RA 2,905,408 A→G 1.9% M397T (ATG→ACG)  eno ← enolase
RA 2,905,409 T→G 2.0% M397L (ATG→CTG)  eno ← enolase
RA 2,905,412 A→C 2.0% S396A (TCT→GCT)  eno ← enolase
RA 2,905,431 Δ1 bp 2.0% coding (1167/1299 nt) eno ← enolase
RA 2,905,432 G→A 2.1% A389V (GCA→GTA)  eno ← enolase
RA 2,905,437 A→T 2.1% T387T (ACT→ACA)  eno ← enolase
RA 2,905,438 +A 2.2% coding (1160/1299 nt) eno ← enolase
RA 2,905,439 T→G 2.0% T387P (ACT→CCT)  eno ← enolase
RA 2,908,098 G→A 2.8% H75H (CAC→CAT)  pyrG ← CTP synthetase
RA 2,908,106 G→A 4.9% L73L (CTG→TTG)  pyrG ← CTP synthetase
RA 2,908,122 A→T 5.8% A67A (GCT→GCA)  pyrG ← CTP synthetase
RA 2,908,125 G→A 5.8% G66G (GGC→GGT)  pyrG ← CTP synthetase
RA 2,908,134 A→G 6.2% T63T (ACT→ACC)  pyrG ← CTP synthetase
RA 2,908,137 A→G 6.0% V62V (GTT→GTC)  pyrG ← CTP synthetase
RA 2,908,143 C→G 6.0% V60V (GTG→GTC)  pyrG ← CTP synthetase
RA 2,908,146 T→C 6.3% E59E (GAA→GAG)  pyrG ← CTP synthetase
RA 2,908,149 C→G 6.3% G58G (GGG→GGC)  pyrG ← CTP synthetase
RA 2,908,155 T→C 6.7% Q56Q (CAA→CAG)  pyrG ← CTP synthetase
RA 2,908,160 T→A 6.7% I55F (ATC→TTC)  pyrG ← CTP synthetase
RA 2,908,161 T→G 6.7% P54P (CCA→CCC)  pyrG ← CTP synthetase
RA 2,908,165 C→T 6.8% S53N (AGC→AAC)  pyrG ← CTP synthetase
RA 2,908,170 A→G 7.0% T51T (ACT→ACC)  pyrG ← CTP synthetase
RA 2,908,173 A→G 7.5% G50G (GGT→GGC)  pyrG ← CTP synthetase
RA 2,908,176 T→C 7.9% P49P (CCA→CCG)  pyrG ← CTP synthetase
RA 2,908,179 A→G 7.0% D48D (GAT→GAC)  pyrG ← CTP synthetase
RA 2,908,182 G→C 6.2% V47V (GTC→GTG)  pyrG ← CTP synthetase
RA 2,908,185 G→A 4.5% N46N (AAC→AAT)  pyrG ← CTP synthetase
RA 2,908,190 T→G 4.5% I45L (ATC→CTC)  pyrG ← CTP synthetase
RA 3,003,330 G→A 100% L371L (CTC→CTT)  ygeV ← DNA‑binding transcriptional regulator
RA 3,033,057 G→A 6.5% I258I (ATC→ATT)  lysS ← lysine tRNA synthetase
RA 3,033,060 T→C 6.7% E257E (GAA→GAG)  lysS ← lysine tRNA synthetase
RA 3,033,063 G→A 6.6% F256F (TTC→TTT)  lysS ← lysine tRNA synthetase
RA 3,033,066 T→G 6.5% V255V (GTA→GTC)  lysS ← lysine tRNA synthetase
RA 3,033,069 A→T 6.7% R254R (CGT→CGA)  lysS ← lysine tRNA synthetase
RA 3,033,075 G→C 6.3% F252L (TTC→TTG)  lysS ← lysine tRNA synthetase
RA 3,033,077 A→T 6.3% F252I (TTC→ATC)  lysS ← lysine tRNA synthetase
RA 3,033,078 G→A 6.3% G251G (GGC→GGT)  lysS ← lysine tRNA synthetase
RA 3,033,081 A→G 6.8% G250G (GGT→GGC)  lysS ← lysine tRNA synthetase
RA 3,033,084 A→G 6.7% V249V (GTT→GTC)  lysS ← lysine tRNA synthetase
RA 3,033,087 C→G 7.0% V248V (GTG→GTC)  lysS ← lysine tRNA synthetase
RA 3,033,089 +G 6.6% coding (742/1518 nt) lysS ← lysine tRNA synthetase
RA 3,033,093 Δ1 bp 6.4% coding (738/1518 nt) lysS ← lysine tRNA synthetase
RA 3,033,103 T→A 6.2% Y243F (TAC→TTC)  lysS ← lysine tRNA synthetase
RA 3,033,108 T→C 6.4% E241E (GAA→GAG)  lysS ← lysine tRNA synthetase
RA 3,033,120 A→G 6.2% R237R (CGT→CGC)  lysS ← lysine tRNA synthetase
RA 3,049,815 G→T 100% R387S (CGC→AGC)  visC ← oxidoreductase
JC 3,175,000 Δ3 bp 10.7% coding (488‑490/828 nt) cpdA ← cyclic 3',5'‑adenosine monophosphate phosphodiesterase
RA 3,306,750 G→A 4.9% I322I (ATC→ATT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,753 A→G 5.0% D321D (GAT→GAC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,762 A→G 4.8% V318V (GTT→GTC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,765 T→C 4.7% V317V (GTA→GTG)  deaD ← ATP‑dependent RNA helicase
RA 3,306,768 C→G 4.9% L316L (CTG→CTC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,769 A→T 4.8% L316Q (CTG→CAG)  deaD ← ATP‑dependent RNA helicase
RA 3,306,772 C→G 4.8% S315T (AGC→ACC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,773 T→A 4.8% S315C (AGC→TGC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,774 G→A 4.6% I314I (ATC→ATT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,777 A→G 4.9% R313R (CGT→CGC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,780 C→G 4.9% E312D (GAG→GAC)  deaD ← ATP‑dependent RNA helicase
RA 3,306,798 G→A 3.5% A306A (GCC→GCT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,801 T→A 2.0% A305A (GCA→GCT)  deaD ← ATP‑dependent RNA helicase
RA 3,306,804 A→C 1.9% V304V (GTT→GTG)  deaD ← ATP‑dependent RNA helicase
RA 3,314,445 C→G 9.2% V475V (GTG→GTC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,448 A→G 10.0% G474G (GGT→GGC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,454 G→A 11.6% D472D (GAC→GAT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,457 G→A 12.2% A471A (GCC→GCT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,460 A→T 11.2% A470A (GCT→GCA)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,472 G→A 10.5% V466V (GTC→GTT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,474 C→T 10.5% V466I (GTC→ATC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,475 T→C 10.5% V465V (GTA→GTG)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,476 A→G 10.3% V465A (GTA→GCA)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,481 G→A 10.6% D463D (GAC→GAT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,484 C→G 10.7% T462T (ACG→ACC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,487 T→C 11.0% A461A (GCA→GCG)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,489 C→A 11.0% A461S (GCA→TCA)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,492 G→T 11.2% Q460K (CAG→AAG)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,511 T→G 10.5% S453S (TCA→TCC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,513 A→C 10.4% S453A (TCA→GCA)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,514 A→G 10.4% T452T (ACT→ACC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,523 G→C 10.9% A449A (GCC→GCG)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,524 G→T 11.0% A449D (GCC→GAC)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,529 C→A 7.1% G447G (GGG→GGT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,314,532 C→A 7.1% P446P (CCG→CCT)  infB ← fused protein chain initiation factor 2, IF2
RA 3,326,032 G→A 4.1% I253I (ATC→ATT)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,035 T→C 4.1% E252E (GAA→GAG)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,038 A→G 4.1% D251D (GAT→GAC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,050 G→A 12.5% I247I (ATC→ATT)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,059 Δ1 bp 11.6% coding (732/1935 nt) ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,062 C→T 11.8% A243A (GCG→GCA)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,064 C→T 11.4% A243T (GCG→ACG)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,067 +C 11.8% coding (724/1935 nt) ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,071 C→G 11.7% A240A (GCG→GCC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,077 T→A 11.4% E238D (GAA→GAT)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,079 C→T 11.4% E238K (GAA→AAA)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,080 G→A 11.5% F237F (TTC→TTT)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,085 T→A 11.5% M236L (ATG→TTG)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,092 A→G 11.5% V233V (GTT→GTC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,098 G→A 11.6% S231S (TCC→TCT)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,101 T→G 11.8% A230A (GCA→GCC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,107 C→G 12.2% V228V (GTG→GTC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,125 T→G 9.7% V222V (GTA→GTC)  ftsH ← protease, ATP‑dependent zinc‑metallo
RA 3,326,134 A→C 4.8% S219S (TCT→TCG)  ftsH ← protease, ATP‑dependent zinc‑metallo
JC 3,342,930 Δ3 bp 2.9% coding (240‑242/576 nt) yrbK → hypothetical protein
RA 3,397,813 C→G 100% D141H (GAT→CAT)  yhdE ← hypothetical protein
RA 3,441,343 A→G 8.9% E254E (GAA→GAG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,347 C→A 9.6% L256M (CTG→ATG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,352 A→G 12.2% V257V (GTA→GTG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,356 T→G 12.1% S259A (TCC→GCC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,358 C→G 12.1% S259S (TCC→TCG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,364 C→T 13.5% R261R (CGC→CGT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,370 A→C 14.1% G263G (GGA→GGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,376 T→C 14.1% D265D (GAT→GAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,379 G→C 14.0% T266T (ACG→ACC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,380 G→A 14.0% V267M (GTG→ATG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,382 G→C 14.5% V267V (GTG→GTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,388 T→C 16.8% D269D (GAT→GAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,391 C→G 16.7% L270L (CTC→CTG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,401 C→A 16.2% R274S (CGC→AGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,402 G→A 16.6% R274H (CGC→CAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,403 C→G 16.6% R274R (CGC→CGG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,404 T→G 17.3% Y275D (TAT→GAT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,406 T→C 17.3% Y275Y (TAT→TAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,431 T→C 12.4% L284L (TTG→CTG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,440 A→T 7.5% S287C (AGC→TGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,441 G→C 7.4% S287T (AGC→ACC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,452 A→G 3.8% I291V (ATC→GTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,454 C→T 3.9% I291I (ATC→ATT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,952 G→T 7.6% A457A (GCG→GCT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,958 T→C 7.4% F459F (TTT→TTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,967 G→C 7.2% L462L (CTG→CTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,970 G→C 7.1% G463G (GGG→GGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,976 A→G 7.0% L465L (CTA→CTG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,977 A→G 7.0% T466A (ACT→GCT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,979 T→A 6.9% T466T (ACT→ACA)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,985 T→C 9.5% D468D (GAT→GAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,441,988 T→C 9.3% I469I (ATT→ATC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,007 T→A 12.1% F476I (TTC→ATC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,017 G→C 12.4% G479A (GGG→GCG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,018 G→T 12.1% G479G (GGG→GGT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,021 T→C 11.7% I480I (ATT→ATC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,024 T→C 11.4% G481G (GGT→GGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,030 G→A 12.4% A483A (GCG→GCA)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,033 G→C 12.1% M484I (ATG→ATC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,037 +C 5.2% coding (1456/1896 nt) thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,040 T→A 5.2% W487R (TGG→AGG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,044 T→C 5.3% F488S (TTT→TCT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,048 C→T 5.3% G489G (GGC→GGT)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,049 T→A 5.3% C490S (TGC→AGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,050 G→C 5.6% C490S (TGC→TCC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,054 G→C 5.8% A491A (GCG→GCC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,063 T→C 5.4% C494C (TGT→TGC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,069 A→C 5.7% V496V (GTA→GTC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,075 A→G 4.1% P498P (CCA→CCG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,078 A→G 3.9% K499K (AAA→AAG)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,442,084 T→C 2.7% H501H (CAT→CAC)  thiC → thiamin (pyrimidine moiety) biosynthesis protein
RA 3,449,979 C→T 3.2% P451P (CCG→CCA)  rpoC ← RNA polymerase, beta prime subunit
RA 3,449,991 G→A 8.1% I447I (ATC→ATT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,449,994 A→T 8.1% A446A (GCT→GCA)  rpoC ← RNA polymerase, beta prime subunit
RA 3,449,997 T→C 8.1% K445K (AAA→AAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,003 T→C 7.9% E443E (GAA→GAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,006 G→A 7.6% I442I (ATC→ATT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,008 T→C 7.7% I442V (ATC→GTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,012 T→G 7.6% V440V (GTA→GTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,018 T→C 7.7% E438E (GAA→GAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,021 A→G 5.9% F437F (TTT→TTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,024 T→C 6.5% A436A (GCA→GCG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,030 G→A 6.4% I434I (ATC→ATT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,039 A→G 6.6% R431R (CGT→CGC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,048 A→C 6.9% T428T (ACT→ACG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,051 C→A 6.7% P427P (CCG→CCT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,069 T→G 6.3% V421V (GTA→GTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,210 C→A 4.0% L374L (CTG→CTT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,213 T→A 3.9% A373A (GCA→GCT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,219 T→C 4.0% K371K (AAA→AAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,220 T→A 4.2% K371I (AAA→ATA)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,221 T→G 4.2% K371Q (AAA→CAA)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,234 G→A 12.6% C366C (TGC→TGT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,240 A→G 12.2% H364H (CAT→CAC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,246 A→C 12.7% R362R (CGT→CGG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,247 C→T 13.1% R362H (CGT→CAT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,248 G→T 13.2% R362S (CGT→AGT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,252 G→C 13.1% Y360* (TAC→TAG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,254 A→G 13.0% Y360H (TAC→CAC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,255 T→C 13.0% P359P (CCA→CCG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,258 A→G 13.1% G358G (GGT→GGC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,261 T→G 12.7% V357V (GTA→GTC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,265 G→A 12.7% T356I (ACC→ATC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,267 G→A 12.7% I355I (ATC→ATT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,270 T→A 12.5% V354V (GTA→GTT)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,273 A→C 12.3% S353S (TCT→TCG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,279 A→G 11.6% G351G (GGT→GGC)  rpoC ← RNA polymerase, beta prime subunit
RA 3,450,303 G→C 8.6% L343L (CTC→CTG)  rpoC ← RNA polymerase, beta prime subunit
RA 3,451,558 A→G 5.1% V1293V (GTT→GTC)  rpoB ← RNA polymerase subunit beta
RA 3,451,560 C→T 5.0% V1293I (GTT→ATT)  rpoB ← RNA polymerase subunit beta
RA 3,451,569 T→G 9.3% M1290L (ATG→CTG)  rpoB ← RNA polymerase subunit beta
RA 3,451,570 T→C 9.6% E1289E (GAA→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,585 T→G 16.3% A1284A (GCA→GCC)  rpoB ← RNA polymerase subunit beta
RA 3,451,588 T→A 16.3% A1283A (GCA→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,600 T→C 18.9% E1279E (GAA→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,602 C→G 18.7% E1279Q (GAA→CAA)  rpoB ← RNA polymerase subunit beta
RA 3,451,605 G→T 19.3% L1278M (CTG→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,451,606 C→T 19.3% A1277A (GCG→GCA)  rpoB ← RNA polymerase subunit beta
RA 3,451,615 T→C 23.2% E1274E (GAA→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,624 C→A 26.2% G1271G (GGG→GGT)  rpoB ← RNA polymerase subunit beta
RA 3,451,630 A→G 27.8% R1269R (CGT→CGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,648 T→A 30.9% A1263A (GCA→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,677 C→T 27.6% V1254I (GTT→ATT)  rpoB ← RNA polymerase subunit beta
RA 3,451,680 G→T 24.7% L1253M (CTG→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,451,682 C→G 24.6% S1252T (AGC→ACC)  rpoB ← RNA polymerase subunit beta
RA 3,451,683 T→A 24.6% S1252C (AGC→TGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,687 A→C 24.8% S1250S (TCT→TCG)  rpoB ← RNA polymerase subunit beta
RA 3,451,689 A→G 25.3% S1250P (TCT→CCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,702 C→A 25.9% A1245A (GCG→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,708 C→A 25.1% M1243I (ATG→ATT)  rpoB ← RNA polymerase subunit beta
RA 3,451,714 G→C 24.1% D1241E (GAC→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,726 G→T 4.6% H1237Q (CAC→CAA)  rpoB ← RNA polymerase subunit beta
RA 3,451,731 T→G 18.7% N1236H (AAC→CAC)  rpoB ← RNA polymerase subunit beta
RA 3,451,735 T→C 16.1% K1234K (AAA→AAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,753 A→G 11.6% G1228G (GGT→GGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,756 A→C 10.0% V1227V (GTT→GTG)  rpoB ← RNA polymerase subunit beta
RA 3,451,759 G→C 6.3% T1226T (ACC→ACG)  rpoB ← RNA polymerase subunit beta
RA 3,451,761 T→A 6.2% T1226S (ACC→TCC)  rpoB ← RNA polymerase subunit beta
RA 3,451,762 T→A 6.2% V1225V (GTA→GTT)  rpoB ← RNA polymerase subunit beta
RA 3,451,768 A→G 6.1% R1223R (CGT→CGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,769 C→A 6.2% R1223L (CGT→CTT)  rpoB ← RNA polymerase subunit beta
RA 3,451,770 G→A 6.3% R1223C (CGT→TGT)  rpoB ← RNA polymerase subunit beta
RA 3,451,772 T→G 6.1% E1222A (GAG→GCG)  rpoB ← RNA polymerase subunit beta
RA 3,451,773 C→G 6.1% E1222Q (GAG→CAG)  rpoB ← RNA polymerase subunit beta
RA 3,451,783 A→G 5.9% G1218G (GGT→GGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,788 T→A 5.8% T1217S (ACT→TCT)  rpoB ← RNA polymerase subunit beta
RA 3,451,792 A→G 4.6% G1215G (GGT→GGC)  rpoB ← RNA polymerase subunit beta
RA 3,451,795 A→G 4.5% D1214D (GAT→GAC)  rpoB ← RNA polymerase subunit beta
RA 3,451,799 T→A 3.2% Y1213F (TAC→TTC)  rpoB ← RNA polymerase subunit beta
RA 3,453,379 T→C 3.5% Q686Q (CAA→CAG)  rpoB ← RNA polymerase subunit beta
RA 3,453,399 A→G 3.6% L680L (TTG→CTG)  rpoB ← RNA polymerase subunit beta
RA 3,453,400 T→G 3.7% A679A (GCA→GCC)  rpoB ← RNA polymerase subunit beta
RA 3,453,409 G→A 3.6% A676A (GCC→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,453,415 A→G 3.5% D674D (GAT→GAC)  rpoB ← RNA polymerase subunit beta
RA 3,453,421 T→C 3.5% E672E (GAA→GAG)  rpoB ← RNA polymerase subunit beta
RA 3,453,424 C→G 3.9% L671L (CTG→CTC)  rpoB ← RNA polymerase subunit beta
RA 3,453,433 G→A 4.0% I668I (ATC→ATT)  rpoB ← RNA polymerase subunit beta
RA 3,453,438 G→T 4.1% L667M (CTG→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,453,441 A→C 4.0% S666A (TCC→GCC)  rpoB ← RNA polymerase subunit beta
RA 3,453,442 C→A 4.0% A665A (GCG→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,453,444 C→T 4.0% A665T (GCG→ACG)  rpoB ← RNA polymerase subunit beta
RA 3,453,446 C→G 4.0% G664A (GGT→GCT)  rpoB ← RNA polymerase subunit beta
RA 3,453,448 G→C 3.8% V663V (GTC→GTG)  rpoB ← RNA polymerase subunit beta
RA 3,453,454 T→G 3.8% V661V (GTA→GTC)  rpoB ← RNA polymerase subunit beta
RA 3,453,459 C→T 3.2% V660M (GTG→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,453,814 T→G 3.8% E541D (GAA→GAC)  rpoB ← RNA polymerase subunit beta
RA 3,453,829 G→A 5.7% G536G (GGC→GGT)  rpoB ← RNA polymerase subunit beta
RA 3,453,832 T→C 5.8% P535P (CCA→CCG)  rpoB ← RNA polymerase subunit beta
RA 3,453,835 G→A 6.0% G534G (GGC→GGT)  rpoB ← RNA polymerase subunit beta
RA 3,453,838 G→C 6.4% L533L (CTC→CTG)  rpoB ← RNA polymerase subunit beta
RA 3,453,847 G→C 6.6% I530M (ATC→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,453,849 T→G 6.3% I530L (ATC→CTC)  rpoB ← RNA polymerase subunit beta
RA 3,453,856 T→C 6.2% K527K (AAA→AAG)  rpoB ← RNA polymerase subunit beta
RA 3,453,865 A→C 6.4% I524M (ATT→ATG)  rpoB ← RNA polymerase subunit beta
RA 3,453,867 T→G 6.6% I524L (ATT→CTT)  rpoB ← RNA polymerase subunit beta
RA 3,453,868 C→A 6.6% E523D (GAG→GAT)  rpoB ← RNA polymerase subunit beta
RA 3,453,871 A→C 6.4% S522S (TCT→TCG)  rpoB ← RNA polymerase subunit beta
RA 3,453,879 G→A 6.2% P520S (CCG→TCG)  rpoB ← RNA polymerase subunit beta
RA 3,453,895 A→G 6.2% F514F (TTT→TTC)  rpoB ← RNA polymerase subunit beta
RA 3,460,411 A→G 4.4% T109T (ACT→ACC)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,414 C→A 4.4% A108A (GCG→GCT)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,417 A→G 4.3% A107A (GCT→GCC)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,420 A→G 4.3% V106V (GTT→GTC)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,423 T→A 3.6% V105V (GTA→GTT)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,429 G→A 3.4% I103I (ATC→ATT)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,447 C→A 3.3% A97A (GCG→GCT)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,468 T→C 5.3% K90K (AAA→AAG)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,471 A→G 5.5% V89V (GTT→GTC)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,473 C→T 5.6% V89I (GTT→ATT)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,474 A→G 5.6% Y88Y (TAT→TAC)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,486 C→G 6.0% G84G (GGG→GGC)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,492 G→A 3.8% C82C (TGC→TGT)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,493 C→G 3.8% C82S (TGC→TCC)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,494 A→C 4.1% C82G (TGC→GGC)  tufB ← protein chain elongation factor EF‑Tu
RA 3,460,498 T→G 7.5% V80V (GTA→GTC)  tufB ← protein chain elongation factor EF‑Tu
RA 3,682,560 T→A 7.7% Q215L (CAG→CTG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,571 C→G 7.7% L211L (CTG→CTC)  ilvD ← dihydroxyacid dehydratase
RA 3,682,577 T→C 7.5% E209E (GAA→GAG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,595 T→C 8.0% S203S (TCA→TCG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,601 A→T 8.0% A201A (GCT→GCA)  ilvD ← dihydroxyacid dehydratase
RA 3,682,607 A→G 8.6% F199F (TTT→TTC)  ilvD ← dihydroxyacid dehydratase
RA 3,682,613 C→A 8.4% G197G (GGG→GGT)  ilvD ← dihydroxyacid dehydratase
RA 3,682,616 G→C 8.8% S196S (TCC→TCG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,622 G→A 8.7% S194S (TCC→TCT)  ilvD ← dihydroxyacid dehydratase
RA 3,682,628 G→A 8.5% C192C (TGC→TGT)  ilvD ← dihydroxyacid dehydratase
RA 3,682,637 A→G 8.4% C189C (TGT→TGC)  ilvD ← dihydroxyacid dehydratase
RA 3,682,643 G→C 6.0% S187S (TCC→TCG)  ilvD ← dihydroxyacid dehydratase
RA 3,682,646 A→G 4.5% R186R (CGT→CGC)  ilvD ← dihydroxyacid dehydratase
RA 3,717,810 T→C 4.1% I329I (ATT→ATC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,816 A→G 4.1% E331E (GAA→GAG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,820 C→A 4.3% Q333K (CAG→AAG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,825 G→A 4.5% A334A (GCG→GCA)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,826 G→A 4.5% G335S (GGT→AGT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,827 G→A 4.5% G335D (GGT→GAT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,828 T→C 4.5% G335G (GGT→GGC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,834 T→G 4.2% V337V (GTT→GTG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,837 T→G 4.0% S338S (TCT→TCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,840 G→C 4.5% A339A (GCG→GCC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,844 G→A 4.4% V341I (GTT→ATT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,858 A→C 4.1% V345V (GTA→GTC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,873 T→C 6.5% D350D (GAT→GAC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,876 T→C 6.8% G351G (GGT→GGC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,880 A→G 7.7% I353V (ATC→GTC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,888 G→C 8.3% L355L (CTG→CTC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,891 A→G 6.6% E356E (GAA→GAG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,892 A→T 6.6% T357S (ACC→TCC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,895 A→G 6.5% N358D (AAC→GAC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,908 C→A 7.0% A362D (GCC→GAC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,909 C→G 7.0% A362A (GCC→GCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,913 A→G 6.9% I364V (ATT→GTT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,915 T→C 7.2% I364I (ATT→ATC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,918 T→C 7.2% R365R (CGT→CGC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,921 T→G 7.3% P366P (CCT→CCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,924 G→T 7.4% A367A (GCG→GCT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,925 G→A 7.4% V368I (GTT→ATT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,931 C→G 7.7% P370A (CCG→GCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,932 C→T 7.6% P370L (CCG→CTG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,933 G→C 7.7% P370P (CCG→CCC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,937 A→G 7.6% I372V (ATT→GTT)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,939 T→G 7.7% I372M (ATT→ATG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,942 C→G 7.8% S373S (TCC→TCG)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
RA 3,717,963 A→C 6.8% A380A (GCA→GCC)  atpA → F1 sector of membrane‑bound ATP synthase subunit alpha
MC JC 3,742,936 Δ1,336 bp 100% insD–insC insD, insC
RA 3,750,122 Δ1 bp 96.3% coding (365/1416 nt) tnaA ← tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
RA 3,750,123 C→T 3.7% G122S (GGC→AGC)  tnaA ← tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
MC JC 3,750,591 Δ1,199 bp 100% insH insH
RA 3,818,803 A→C 1.7% F62C (TTT→TGT)  gmk ← guanylate kinase
RA 3,884,404 T→C 4.8% I167I (ATT→ATC)  aldB → aldehyde dehydrogenase B
RA 3,884,425 G→C 5.2% L174L (CTG→CTC)  aldB → aldehyde dehydrogenase B
RA 3,884,434 G→C 2.8% A177A (GCG→GCC)  aldB → aldehyde dehydrogenase B
RA 3,884,436 G→C 2.9% S178T (AGC→ACC)  aldB → aldehyde dehydrogenase B
RA 3,884,437 C→G 2.9% S178R (AGC→AGG)  aldB → aldehyde dehydrogenase B
RA 3,884,446 G→C 4.9% M181I (ATG→ATC)  aldB → aldehyde dehydrogenase B
RA 3,884,452 C→G 5.2% P183P (CCC→CCG)  aldB → aldehyde dehydrogenase B
RA 3,884,461 G→C 5.0% A186A (GCG→GCC)  aldB → aldehyde dehydrogenase B
RA 3,884,464 G→C 4.9% A187A (GCG→GCC)  aldB → aldehyde dehydrogenase B
RA 3,884,473 T→C 4.8% C190C (TGT→TGC)  aldB → aldehyde dehydrogenase B
RA 3,884,474 G→A 4.9% V191M (GTG→ATG)  aldB → aldehyde dehydrogenase B
RA 3,884,476 G→C 4.9% V191V (GTG→GTC)  aldB → aldehyde dehydrogenase B
RA 3,884,479 G→A 4.8% V192V (GTG→GTA)  aldB → aldehyde dehydrogenase B
RA 3,884,482 G→C 4.6% L193L (CTG→CTC)  aldB → aldehyde dehydrogenase B
RA 3,884,485 A→G 5.1% K194K (AAA→AAG)  aldB → aldehyde dehydrogenase B
RA 3,898,657 C→G 100% L259V (CTG→GTG)  yiaJ → DNA‑binding transcriptional repressor
MC JC 3,958,123 Δ34 bp 100% coding (1156‑1189/1287 nt) dctA → C4‑dicarboxylic acid, orotate and citrate transporter
RA 4,051,684 G→C 8.1% V150V (GTG→GTC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,688 G→C 8.2% D152H (GAT→CAT)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,689 A→G 7.8% D152G (GAT→GGT)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,690 T→A 7.7% D152E (GAT→GAA)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,694 G→A 8.5% A154T (GCG→ACG)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,695 C→A 8.3% A154E (GCG→GAG)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,699 G→C 8.1% V155V (GTG→GTC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,705 G→C 7.9% L157L (CTG→CTC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,706 T→A 8.0% F158I (TTT→ATT)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,708 T→G 9.1% F158L (TTT→TTG)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,711 T→C 8.7% D159D (GAT→GAC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,723 T→A 8.6% S163S (TCT→TCA)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,729 C→G 6.8% L165L (CTC→CTG)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,732 T→C 6.8% D166D (GAT→GAC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,051,741 G→C 4.0% L169L (CTG→CTC)  ugpC → glycerol‑3‑phosphate transporter subunit
RA 4,090,749 A→T 100% Q135L (CAG→CTG)  malQ → 4‑alpha‑glucanotransferase
RA 4,153,710 A→C 5.0% L196R (CTG→CGG)  crp ← DNA‑binding transcriptional dual regulator
RA 4,165,991 A→C 100% K43T (AAA→ACA)  rpsL → 30S ribosomal protein S12
RA 4,166,073 A→G 6.6% E70E (GAA→GAG)  rpsL → 30S ribosomal protein S12
RA 4,166,076 T→C 6.5% G71G (GGT→GGC)  rpsL → 30S ribosomal protein S12
RA 4,166,098 G→A 9.2% V79M (GTG→ATG)  rpsL → 30S ribosomal protein S12
RA 4,166,101 A→G 10.5% I80V (ATC→GTC)  rpsL → 30S ribosomal protein S12
RA 4,166,103 C→G 10.5% I80M (ATC→ATG)  rpsL → 30S ribosomal protein S12
RA 4,166,106 G→C 10.5% L81L (CTG→CTC)  rpsL → 30S ribosomal protein S12
RA 4,166,107 A→G 10.5% I82V (ATC→GTC)  rpsL → 30S ribosomal protein S12
RA 4,166,109 C→T 10.5% I82I (ATC→ATT)  rpsL → 30S ribosomal protein S12
RA 4,166,112 T→C 9.2% R83R (CGT→CGC)  rpsL → 30S ribosomal protein S12
RA 4,166,115 C→T 9.2% G84G (GGC→GGT)  rpsL → 30S ribosomal protein S12
RA 4,166,127 A→G 9.9% K88K (AAA→AAG)  rpsL → 30S ribosomal protein S12
RA 4,166,142 T→C 10.4% V93V (GTT→GTC)  rpsL → 30S ribosomal protein S12
RA 4,166,145 T→C 10.2% R94R (CGT→CGC)  rpsL → 30S ribosomal protein S12
RA 4,166,149 C→A 10.4% H96N (CAC→AAC)  rpsL → 30S ribosomal protein S12
RA 4,166,151 C→G 10.5% H96Q (CAC→CAG)  rpsL → 30S ribosomal protein S12
RA 4,166,153 C→T 10.4% T97I (ACC→ATC)  rpsL → 30S ribosomal protein S12
RA 4,166,157 A→C 9.9% V98V (GTA→GTC)  rpsL → 30S ribosomal protein S12
RA 4,166,164 G→T 4.1% A101S (GCG→TCG)  rpsL → 30S ribosomal protein S12
RA 4,166,169 T→C 3.1% L102L (CTT→CTC)  rpsL → 30S ribosomal protein S12
RA 4,168,097 A→C 3.8% D399A (GAC→GCC)  fusA → protein chain elongation factor EF‑G
RA 4,168,098 C→A 3.8% D399E (GAC→GAA)  fusA → protein chain elongation factor EF‑G
RA 4,168,100 C→A 3.8% P400Q (CCG→CAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,107 G→T 3.9% A402A (GCG→GCT)  fusA → protein chain elongation factor EF‑G
RA 4,168,110 G→A 3.6% P403P (CCG→CCA)  fusA → protein chain elongation factor EF‑G
RA 4,168,114 A→G 3.6% I405V (ATT→GTT)  fusA → protein chain elongation factor EF‑G
RA 4,168,122 A→G 3.7% E407E (GAA→GAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,123 C→T 3.3% R408C (CGT→TGT)  fusA → protein chain elongation factor EF‑G
RA 4,168,124 G→C 3.4% R408P (CGT→CCT)  fusA → protein chain elongation factor EF‑G
RA 4,168,125 T→C 3.5% R408R (CGT→CGC)  fusA → protein chain elongation factor EF‑G
RA 4,168,129 G→T 3.6% E410* (GAA→TAA)  fusA → protein chain elongation factor EF‑G
RA 4,168,130 A→C 3.6% E410A (GAA→GCA)  fusA → protein chain elongation factor EF‑G
RA 4,168,131 A→C 3.6% E410D (GAA→GAC)  fusA → protein chain elongation factor EF‑G
RA 4,168,137 T→G 3.7% P412P (CCT→CCG)  fusA → protein chain elongation factor EF‑G
RA 4,168,140 G→T 3.7% E413D (GAG→GAT)  fusA → protein chain elongation factor EF‑G
RA 4,168,146 A→T 3.3% V415V (GTA→GTT)  fusA → protein chain elongation factor EF‑G
RA 4,168,153 A→G 2.0% I418V (ATC→GTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,155 C→T 2.0% I418I (ATC→ATT)  fusA → protein chain elongation factor EF‑G
RA 4,168,158 A→T 2.1% A419A (GCA→GCT)  fusA → protein chain elongation factor EF‑G
RA 4,168,164 A→G 2.1% E421E (GAA→GAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,290 A→G 7.8% E463E (GAA→GAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,293 G→C 7.7% L464L (CTG→CTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,303 A→G 10.7% I468V (ATC→GTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,306 A→C 10.7% I469L (ATC→CTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,308 C→G 10.7% I469M (ATC→ATG)  fusA → protein chain elongation factor EF‑G
RA 4,168,317 T→C 10.3% R472R (CGT→CGC)  fusA → protein chain elongation factor EF‑G
RA 4,168,329 A→G 10.4% E476E (GAA→GAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,335 C→G 9.9% N478K (AAC→AAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,338 T→C 10.1% V479V (GTT→GTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,344 G→A 9.8% A481A (GCG→GCA)  fusA → protein chain elongation factor EF‑G
RA 4,168,348 G→A 9.6% V483I (GTA→ATA)  fusA → protein chain elongation factor EF‑G
RA 4,168,350 A→C 9.6% V483V (GTA→GTC)  fusA → protein chain elongation factor EF‑G
RA 4,168,356 A→C 10.0% K485N (AAA→AAC)  fusA → protein chain elongation factor EF‑G
RA 4,168,374 T→C 8.3% R491R (CGT→CGC)  fusA → protein chain elongation factor EF‑G
RA 4,168,377 A→G 6.4% E492E (GAA→GAG)  fusA → protein chain elongation factor EF‑G
RA 4,168,380 T→C 5.6% T493T (ACT→ACC)  fusA → protein chain elongation factor EF‑G
RA 4,168,387 C→A 2.8% Q496K (CAG→AAG)  fusA → protein chain elongation factor EF‑G
RA 4,169,320 A→T 22.9% A78A (GCA→GCT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,326 A→C 21.4% V80V (GTA→GTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,330 T→G 16.4% C82G (TGC→GGC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,331 G→C 15.7% C82S (TGC→TCC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,332 C→T 15.4% C82C (TGC→TGT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,338 G→C 29.6% G84G (GGG→GGC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,350 T→C 31.7% Y88Y (TAT→TAC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,351 G→A 31.1% V89I (GTT→ATT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,353 T→C 30.8% V89V (GTT→GTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,356 A→G 30.3% K90K (AAA→AAG)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,395 C→T 35.4% I103I (ATC→ATT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,401 A→T 35.6% V105V (GTA→GTT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,404 T→C 35.5% V106V (GTT→GTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,407 T→C 35.5% A107A (GCT→GCC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,410 G→T 35.8% A108A (GCG→GCT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,413 T→C 35.8% T109T (ACT→ACC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,419 C→T 36.8% G111G (GGC→GGT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,444 A→G 29.8% I120V (ATC→GTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,446 C→T 32.5% I120I (ATC→ATT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,449 G→C 35.5% L121L (CTG→CTC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,454 G→C 37.4% G123A (GGT→GCT)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,458 T→C 36.6% R124R (CGT→CGC)  tufA → protein chain elongation factor EF‑Tu
RA 4,169,464 A→T 33.3% V126V (GTA→GTT)  tufA → protein chain elongation factor EF‑Tu
MC JC 4,310,363 Δ1,199 bp 100% insH–[alsK] insH, [alsK]
RA 4,347,339 C→T 22.9% R251C (CGC→TGC)  melA → alpha‑galactosidase
RA 4,348,801 G→T 15.0% G248V (GGC→GTC)  melB → melibiose:sodium symporter
RA 4,353,540 T→C 0.94% intergenic (‑118/+453) dcuB ← / ← dcuR C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS
RA 4,371,271 Δ2 bp 100% intergenic (‑6/+299) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,546,535 T→A 100% intergenic (+296/‑182) fimB → / → fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA
RA 4,633,709 C→A 2.9% S498S (TCG→TCT)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,715 A→G 2.9% V496V (GTT→GTC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,720 T→C 3.4% M495V (ATG→GTG)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,721 C→G 3.0% A494A (GCG→GCC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,736 C→G 3.1% E489D (GAG→GAC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,738 C→T 3.1% E489K (GAG→AAG)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,740 A→T 3.2% L488Q (CTG→CAG)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,745 G→T 3.2% A486A (GCC→GCA)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,759 C→A 3.4% A482S (GCG→TCG)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,760 G→A 3.4% R481R (CGC→CGT)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,762 G→A 3.4% R481C (CGC→TGC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,774 T→C 3.2% I477V (ATC→GTC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,775 A→G 3.2% D476D (GAT→GAC)  yjjK ← ABC transporter ATP‑binding protein
RA 4,633,778 C→A 3.1% L475L (CTG→CTT)  yjjK ← ABC transporter ATP‑binding protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007779 2176983–2178181 2178208 28–1226 249 [0] [0] 278 insH insH
* * ÷ NC_007779 3128824–3130002 3147473 17472–18650 168 [165] [0] 233 [yghO]–[yghZ] 19 genes
[yghO], insH, yghQ, yghR, yghS, yghT, pitB, gss, yghU, hybG, hybF, hybE, hybD, hybC, hybB, hybA, hybO, yghW, [yghZ]
* * ÷ NC_007779 3261134–3262332 3262337 6–1204 261 [1] [0] 346 insH–[tdcD] insH, [tdcD]

Unassigned new junction evidence...
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 273179 =NA (NA)146 (0.680) 96/180 NT 64.3% coding (1109/1146 nt) ykfC hypothetical protein
?NC_007779 657877 = 81 (0.380)coding (164/210 nt) cspE DNA‑binding transcriptional repressor
* ? NC_007779 = 274373NA (NA)94 (0.440) 60/180 NT 53.1% intergenic (‑32/‑176) insH/mmuP IS5 transposase and trans‑activator/S‑methylmethionine transporter
?NC_007779 = 657880 83 (0.380)coding (167/210 nt) cspE DNA‑binding transcriptional repressor
* ? NC_007779 289856 =NA (NA)151 (1.100) 83/114 NT 100% intergenic (‑327/+17) argF/insB ornithine carbamoyltransferase 2, chain F/IS1 transposase InsAB'
?NC_007779 = 2176982 0 (0.000)intergenic (‑281/‑69) gatB/insH PTS system galactitol‑specific transporter subunit IIB/IS5 element protein
* ? NC_007779 380484 =NA (NA)217 (1.010) 116/180 NT NA intergenic (‑418/‑46) yaiO/insC hypothetical protein/IS2 insertion element repressor InsA
?NC_007779 = 381407 NA (NA)coding (510/906 nt) insD IS2 insertion element transposase InsAB'
* ? NC_007779 381401 =NA (NA)221 (1.050) 114/176 NT NA coding (504/906 nt) insD IS2 insertion element transposase InsAB'
?NC_007779 = 381812 NA (NA)coding (303/387 nt) yaiF hypothetical protein
* ? NC_007779 = 608570NA (NA)138 (0.660) 92/174 NT 64.1% intergenic (+170/+112) insL/entD IS186/IS421 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
?NC_007779 1305025 = 80 (0.370)coding (413/921 nt) oppB oligopeptide transporter subunit
* ? NC_007779 1209367 =89 (0.410)85 (0.480) 66/148 NT 52.4% coding (290/630 nt) ycfK hypothetical protein
?NC_007779 1211196 = 81 (0.460)intergenic (‑500/‑66) tfaE/pin tail fiber assembly protein/site‑specific DNA recombinase
* ? NC_007779 = 120938292 (0.430)85 (0.480) 67/148 NT 52.0% coding (305/630 nt) ycfK hypothetical protein
?NC_007779 = 1211179 81 (0.460)intergenic (‑483/‑83) tfaE/pin tail fiber assembly protein/site‑specific DNA recombinase
* ? NC_007779 1221489 =3 (0.010)187 (0.890) 102/176 NT 98.5% intergenic (+711/+2393) ymgF/ymgD hypothetical protein/hypothetical protein
?NC_007779 1301041 = NA (NA)intergenic (+219/‑89) ychE/insC inner membrane protein/IS2 element protein
* ? NC_007779 = 12214950 (0.000)199 (0.920) 115/180 NT 100% intergenic (+717/+2387) ymgF/ymgD hypothetical protein/hypothetical protein
?NC_007779 = 1302369 NA (NA)intergenic (+11/‑527) insD/oppA IS2 element protein/oligopeptide transporter subunit
* ? NC_007779 = 130503779 (0.370)142 (0.690) 89/172 NT 65.3% coding (425/921 nt) oppB oligopeptide transporter subunit
?NC_007779 2519723 = NA (NA)intergenic (+33/‑54) nupC/insL nucleoside (except guanosine) transporter/transposase
* ? NC_007779 1397758 =NA (NA)158 (0.730) 93/180 NT 100% intergenic (‑122/‑32) ynaI/insH inner membrane protein/IS5 transposase and trans‑activator
?NC_007779 1672777 = 0 (0.000)intergenic (+111/‑313) ynfM/asr transporter/acid shock‑inducible periplasmic protein
* ? NC_007779 = 16727800 (0.000)195 (0.900) 110/180 NT 100% intergenic (+114/‑310) ynfM/asr transporter/acid shock‑inducible periplasmic protein
?NC_007779 1980209 = NA (NA)intergenic (‑289/+146) flhD/insH DNA‑binding transcriptional dual regulator/IS5 element protein
* ? NC_007779 1907280 =8 (0.040)206 (0.950) 110/180 NT 96.3% intergenic (+307/‑122) yobD/yebN inner membrane protein/inner membrane protein
?NC_007779 = 2412225 NA (NA)intergenic (‑55/‑782) insA/yfbQ IS1 element protein/aminotransferase
* ? NC_007779 = 19072885 (0.020)187 (0.870) 110/180 NT 97.4% intergenic (+315/‑114) yobD/yebN inner membrane protein/inner membrane protein
?NC_007779 2411458 = NA (NA)intergenic (‑147/+15) lrhA/insB DNA‑binding transcriptional repressor/IS1 element protein
* ? NC_007779 1980091 =0 (0.000)152 (0.700) 93/180 NT 100% intergenic (‑171/+264) flhD/insH DNA‑binding transcriptional dual regulator/IS5 element protein
?NC_007779 1980209 = NA (NA)intergenic (‑289/+146) flhD/insH DNA‑binding transcriptional dual regulator/IS5 element protein
* ? NC_007779 = 19800950 (0.000)193 (0.900) 118/178 NT 100% intergenic (‑175/+260) flhD/insH DNA‑binding transcriptional dual regulator/IS5 element protein
?NC_007779 2176984 = NA (NA)intergenic (‑283/‑67) gatB/insH PTS system galactitol‑specific transporter subunit IIB/IS5 element protein
* ? NC_007779 2071081 =NA (NA)6 (0.030) 6/174 NT 2.7% intergenic (‑1623/+8) insH/insD IS5 transposase and trans‑activator/IS2 insertion element transposase InsAB'
?NC_007779 = 2072412 224 (1.040)coding (32/261 nt) yoeE disrupted hemin or colicin receptor
* ? NC_007779 2178209 =0 (0.000)203 (0.940) 126/180 NT 100% intergenic (+178/+184) insH/gatZ IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit
?NC_007779 = 2412225 NA (NA)intergenic (‑55/‑782) insA/yfbQ IS1 element protein/aminotransferase
* ? NC_007779 2320794 =NA (NA)191 (0.880) 108/180 NT 100% intergenic (+633/+11) rcsB/insD DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/IS2 element protein
?NC_007779 = 2589834 0 (0.000)intergenic (+470/‑69) acrD/yffB aminoglycoside/multidrug efflux system/hypothetical protein
* ? NC_007779 = 2322124NA (NA)206 (0.950) 116/180 NT 100% intergenic (‑91/‑2589) insC/atoS IS2 element protein/sensory histidine kinase in two‑component regulatory system with AtoC
?NC_007779 2589830 = 0 (0.000)intergenic (+466/‑73) acrD/yffB aminoglycoside/multidrug efflux system/hypothetical protein
* ? NC_007779 2411458 =NA (NA)9 (0.040) 8/180 NT 3.8% intergenic (‑147/+15) lrhA/insB DNA‑binding transcriptional repressor/IS1 element protein
?NC_007779 2941519 = 229 (1.060)intergenic (‑296/+55) gcvA/ygdI DNA‑binding transcriptional dual regulator/hypothetical protein
* ? NC_007779 2411458 =NA (NA)199 (0.920) 117/180 NT 95.2% intergenic (‑147/+15) lrhA/insB DNA‑binding transcriptional repressor/IS1 element protein
?NC_007779 = 2985055 10 (0.050)coding (553/1230 nt) yqeG transporter
* ? NC_007779 = 2412225NA (NA)13 (0.060) 13/180 NT 5.3% intergenic (‑55/‑782) insA/yfbQ IS1 element protein/aminotransferase
?NC_007779 = 2941527 232 (1.070)intergenic (‑304/+47) gcvA/ygdI DNA‑binding transcriptional dual regulator/hypothetical protein
* ? NC_007779 = 2412225NA (NA)178 (0.820) 106/180 NT 96.7% intergenic (‑55/‑782) insA/yfbQ IS1 element protein/aminotransferase
?NC_007779 2985047 = 6 (0.030)coding (545/1230 nt) yqeG transporter
* ? NC_007779 2519723 =NA (NA)3 (0.010) 3/172 NT 1.5% intergenic (+33/‑54) nupC/insL nucleoside (except guanosine) transporter/transposase
?NC_007779 3175156 = 207 (0.960)coding (334/828 nt) cpdA cyclic 3',5'‑adenosine monophosphate phosphodiesterase
* ? NC_007779 = 2521057NA (NA)3 (0.010) 3/174 NT 1.6% intergenic (+168/+32) insL/yfeA transposase/diguanylate cyclase
?NC_007779 = 3175170 194 (0.900)coding (320/828 nt) cpdA cyclic 3',5'‑adenosine monophosphate phosphodiesterase
* ? NC_007779 3147474 =0 (0.000)212 (0.980) 123/180 NT 100% coding (922/1041 nt) yghZ aldo‑keto reductase
?NC_007779 = 3262328 NA (NA)coding (1188/1296 nt) tdcD propionate kinase/acetate kinase C, anaerobic
* ? NC_007779 = 3186081NA (NA)93 (0.440) 67/178 NT 45.4% coding (26/2466 nt) yqiG outer membrane usher protein
?NC_007779 3512753 = 113 (0.520)coding (529/1026 nt) cytR DNA‑binding transcriptional dual regulator
* ? NC_007779 = 32611330 (0.000)224 (1.110) 117/168 NT 100% intergenic (‑59/‑69) tdcE/insH pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein
?NC_007779 = 3748109 NA (NA)intergenic (+150/+962) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
* ? NC_007779 3261134 =NA (NA)170 (0.790) 99/180 NT 100% intergenic (‑60/‑68) tdcE/insH pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein
?NC_007779 3265774 = 0 (0.000)coding (110/990 nt) tdcB catabolic threonine dehydratase, PLP‑dependent
* ? NC_007779 3261135 =NA (NA)225 (1.050) 115/178 NT 100% intergenic (‑61/‑67) tdcE/insH pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein
?NC_007779 3262338 = 0 (0.000)coding (1178/1296 nt) tdcD propionate kinase/acetate kinase C, anaerobic
* ? NC_007779 = 32657770 (0.000)240 (1.110) 131/180 NT 100% coding (107/990 nt) tdcB catabolic threonine dehydratase, PLP‑dependent
?NC_007779 3365411 = NA (NA)intergenic (+368/+146) yhcD/insH outer membrane protein/IS5 transposase and trans‑activator
* ? NC_007779 = 3512759114 (0.530)99 (0.460) 76/178 NT 46.8% coding (535/1026 nt) cytR DNA‑binding transcriptional dual regulator
?NC_007779 = 3744262 NA (NA)intergenic (‑90/+31) insC/yidZ IS2 element protein/DNA‑binding transcriptional regulator
* ? NC_007779 = 3744263NA (NA)247 (1.140) 131/180 NT 100% intergenic (‑91/+30) insC/yidZ IS2 element protein/DNA‑binding transcriptional regulator
?NC_007779 3903274 = 0 (0.000)coding (37/825 nt) bax hypothetical protein
* ? NC_007779 = 37469100 (0.000)240 (1.160) 131/172 NT 100% intergenic (‑508/‑69) mdtL/insH multidrug efflux system protein/IS5 element protein
?NC_007779 3748110 = 0 (0.000)intergenic (+151/+961) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
* ? NC_007779 3746911 =NA (NA)268 (1.240) 128/180 NT 100% intergenic (‑509/‑68) mdtL/insH multidrug efflux system protein/IS5 element protein
?NC_007779 = 3748646 0 (0.000)intergenic (+687/+425) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
* ? NC_007779 = 3748105NA (NA)253 (1.170) 130/180 NT 100% intergenic (+146/+966) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
?NC_007779 3748643 = 0 (0.000)intergenic (+684/+428) insH/tnaA IS5 element protein/tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent
* ? NC_007779 = 39032790 (0.000)242 (1.130) 124/178 NT 100% coding (42/825 nt) bax hypothetical protein
?NC_007779 = 4504190 NA (NA)intergenic (+10/‑89) insD/yjgW IS2 insertion element transposase InsAB'/hypothetical protein
* ? NC_007779 3987186 =NA (NA)208 (0.970) 113/178 NT 100% intergenic (‑732/‑31) slp/insH outer membrane lipoprotein/IS5 transposase and trans‑activator
?NC_007779 = 4009203 0 (0.000)coding (1379/1623 nt) yhiJ hypothetical protein
* ? NC_007779 = 3988379NA (NA)197 (0.910) 114/180 NT 100% coding (746/783 nt) yhiS hypothetical protein
?NC_007779 4009199 = 0 (0.000)coding (1375/1623 nt) yhiJ hypothetical protein
* ? NC_007779 4310363 =NA (NA)229 (1.060) 124/180 NT 100% intergenic (‑287/‑68) yjcS/insH alkyl sulfatase/IS5 element protein
?NC_007779 4353540 = 0 (0.000)intergenic (‑118/+453) dcuB/dcuR C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS
* ? NC_007779 = 4311557NA (NA)298 (1.380) 137/180 NT 100% coding (921/1029 nt) alsK D‑allose kinase
?NC_007779 = 4353543 0 (0.000)intergenic (‑121/+450) dcuB/dcuR C4‑dicarboxylate antiporter/DNA‑binding response regulator in two‑component regulatory system with DcuS
* ? NC_007779 4355060 =2 (0.010)254 (1.180) 131/180 NT 99.2% coding (1281/1632 nt) dcuS sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration
?NC_007779 4502861 = NA (NA)intergenic (+241/‑46) intB/insC integrase/IS2 insertion element repressor InsA
* ? NC_007779 = 43550664 (0.020)208 (0.990) 118/176 NT 98.2% coding (1275/1632 nt) dcuS sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration
?NC_007779 = 4504189 NA (NA)intergenic (+9/‑90) insD/yjgW IS2 insertion element transposase InsAB'/hypothetical protein